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Table 1 Biclustering results of different methods for simulated data using the plaid model

From: Bayesian biclustering of gene expression data

  Sensitivity Specificity Overlapping rate # of clusters
ISA (0.6, 1) 1 0.84 0.99 0.84 0 0.12 1 3
ISA (0.6, 1.2) 0.95 0.53 0.84 0.90 0.06 0.08 10 8
ISA (0.7, 1.1) 0.84 0.68 0.91 0.84 0 0.16 10 8
SAMBA 0.43 0.39 0.99 0.99 0.31 0.3 7 14
CC* 1 0.98 0 0 0.02 0 10 10
OPSMs 0.38 0.25 0.94 0.96 0.3 0.5 11 12
Plaid 1 1 1 0.73 0 0.63 1 11
BBC** 1 1 1 1 0 0 1 3
  1. Note: *In CC's method, the number of clusters is preset to be 10. **In BBC, the overlapping rate is automatically 0.