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Table 2 Overlap Ratios for discriminating intrinsically unstructured segments from intrinsically structured segments in membrane proteins as a function of window length (W.L.).

From: Investigation of transmembrane proteins using a computational approach

W.L. H KD H Ei H En H LD P G P Z Bulk. Flex.
31 0.318 0.163 0.170 0.243 0.220 0.134 0.349 0.227
29 0.221 0.229 0.167 0.249 0.138 0.161 0.351 0.238
27 0.222 0.150 0.164 0.230 0.170 0.142 0.221 0.263
25 0.216 0.234 0.162 0.241 0.175 0.142 0.364 0.272
23 0.253 0.143 0.160 0.253 0.163 0.157 0.238 0.254
21 0.182 0.139 0.144 0.267 0.176 0.159 0.323 0.271
19 0.285 0.142 0.149 0.257 0.172 0.251 0.337 0.291
17 0.290 0.199 0.148 0.266 0.183 0.307 0.353 0.279
15 0.320 0.170 0.155 0.274 0.182 0.183 0.338 0.361
13 0.264 0.180 0.165 0.284 0.194 0.254 0.358 0.340
11 0.310 0.228 0.195 0.281 0.220 0.446 0.345 0.358
9 0.372 0.230 0.226 0.325 0.269 0.251 0.416 0.401
  1. Here H KD , H Ei , H En , H LD indicate the Kyte-Doolittle, Eisenberg-Schwarz-Komaromy-Wall, Engelman-Steitz-Goldman, and Liu-Deber hydropathy scales, respectively, P G , P Z indicate the Grantham and Zimmerman-Eliezer-Simha polarity scales, respectively, Bulk. = bulkiness, and Flex. = flexibility.
  2. Reproduced with permission from [38]