Table 1 Validation by ChIP-chip data
From: Inferring gene regulatory networks by thermodynamic modeling
Role | TF | # of target genes | # of genes verified in ChIP | Chi-Square | P-value |
|---|---|---|---|---|---|
Activation | Nanog | 39 | 12 | 10.46986 | 0.00121 |
| Â | Sox2 | 121 | 21 | 12.437 | 0.00042 |
| Â | Oct4 | 67 | 8 | 2.436113 | 0.11857 |
| Â | Klf4 | 49 | 18 | 13.90787 | 0.00019 |
Repression | Nanog | 47 | 11 | 4.190152 | 0.04066 |
| Â | Sox2 | 132 | 19 | 5.778738 | 0.01622 |
| Â | Oct4 | 103 | 11 | 2.121288 | 0.145264 |
| Â | Klf4 | 62 | 14 | 1.335151 | 0.247891 |