TY - JOUR AU - Songyang, Z. AU - Shoelson, S. E. AU - Chaudhuri, M. AU - Gish, G. AU - Pawson, T. AU - Haser, W. G. AU - King, F. AU - Roberts, T. AU - Ratnofsky, S. AU - Lechleider, R. J. PY - 1993 DA - 1993// TI - SH2 domains recognize specific phosphopeptide sequences JO - Cell VL - 72 UR - https://doi.org/10.1016/0092-8674(93)90404-E DO - 10.1016/0092-8674(93)90404-E ID - Songyang1993 ER - TY - JOUR AU - Songyang, Z. AU - Shoelson, S. E. AU - McGlade, J. AU - Olivier, P. AU - Pawson, T. AU - Bustelo, X. R. AU - Barbacid, M. AU - Sabe, H. AU - Hanafusa, H. AU - Yi, T. PY - 1994 DA - 1994// TI - Specific motifs recognized by the SH2 domains of Csk, 3BP2, fps/fes, GRB-2, HCP, SHC, Syk, and Vav JO - Mol Cell Biol VL - 14 UR - https://doi.org/10.1128/MCB.14.4.2777 DO - 10.1128/MCB.14.4.2777 ID - Songyang1994 ER - TY - JOUR AU - Yaffe, M. B. AU - Leparc, G. G. AU - Lai, J. AU - Obata, T. AU - Volinia, S. AU - Cantley, L. C. PY - 2001 DA - 2001// TI - A motif-based profile scanning approach for genome-wide prediction of signaling pathways JO - Nat Biotechnol VL - 19 UR - https://doi.org/10.1038/86737 DO - 10.1038/86737 ID - Yaffe2001 ER - TY - JOUR AU - Obenauer, J. C. AU - Cantley, L. C. AU - Yaffe, M. B. PY - 2003 DA - 2003// TI - Scansite 2.0: Proteome-wide prediction of cell signaling interactions using short sequence motifs JO - Nucleic Acids Res VL - 31 UR - https://doi.org/10.1093/nar/gkg584 DO - 10.1093/nar/gkg584 ID - Obenauer2003 ER - TY - JOUR AU - Puntervoll, P. AU - Linding, R. AU - Gemund, C. AU - Chabanis-Davidson, S. AU - Mattingsdal, M. AU - Cameron, S. AU - Martin, D. M. AU - Ausiello, G. AU - Brannetti, B. AU - Costantini, A. PY - 2003 DA - 2003// TI - ELM server: A new resource for investigating short functional sites in modular eukaryotic proteins JO - Nucleic Acids Res VL - 31 UR - https://doi.org/10.1093/nar/gkg545 DO - 10.1093/nar/gkg545 ID - Puntervoll2003 ER - TY - JOUR AU - Garner, E. AU - Romero, P. AU - Dunker, A. K. AU - Brown, C. AU - Obradovic, Z. PY - 1999 DA - 1999// TI - Predicting Binding Regions within Disordered Proteins JO - Genome Inform Ser Workshop Genome Inform VL - 10 ID - Garner1999 ER - TY - JOUR AU - Callaghan, A. J. AU - Aurikko, J. P. AU - Ilag, L. L. AU - Gunter Grossmann, J. AU - Chandran, V. AU - Kuhnel, K. AU - Poljak, L. AU - Carpousis, A. J. AU - Robinson, C. V. AU - Symmons, M. F. PY - 2004 DA - 2004// TI - Studies of the RNA degradosome-organizing domain of the Escherichia coli ribonuclease RNase E JO - J Mol Biol VL - 340 UR - https://doi.org/10.1016/j.jmb.2004.05.046 DO - 10.1016/j.jmb.2004.05.046 ID - Callaghan2004 ER - TY - JOUR AU - Mohan, A. AU - Oldfield, C. J. AU - Radivojac, P. AU - Vacic, V. AU - Cortese, M. S. AU - Dunker, A. K. AU - Uversky, V. N. PY - 2006 DA - 2006// TI - Analysis of molecular recognition features (MoRFs) JO - J Mol Biol VL - 362 UR - https://doi.org/10.1016/j.jmb.2006.07.087 DO - 10.1016/j.jmb.2006.07.087 ID - Mohan2006 ER - TY - JOUR AU - Vacic, V. AU - Oldfield, C. J. AU - Mohan, A. AU - Radivojac, P. AU - Cortese, M. S. AU - Uversky, V. N. AU - Dunker, A. K. PY - 2007 DA - 2007// TI - Characterization of molecular recognition features, MoRFs, and their binding partners JO - J Proteome Res VL - 6 UR - https://doi.org/10.1021/pr0701411 DO - 10.1021/pr0701411 ID - Vacic2007 ER - TY - JOUR AU - Cheng, Y. AU - Oldfield, C. J. AU - Meng, J. AU - Romero, P. AU - Uversky, V. N. AU - Dunker, A. K. PY - 2007 DA - 2007// TI - Mining alpha-helix-forming molecular recognition features with cross species sequence alignments JO - Biochemistry VL - 46 UR - https://doi.org/10.1021/bi7012273 DO - 10.1021/bi7012273 ID - Cheng2007 ER - TY - JOUR AU - Oldfield, C. J. AU - Cheng, Y. AU - Cortese, M. S. AU - Romero, P. AU - Uversky, V. N. AU - Dunker, A. K. PY - 2005 DA - 2005// TI - Coupled folding and binding with alpha-helix-forming molecular recognition elements JO - Biochemistry VL - 44 UR - https://doi.org/10.1021/bi050736e DO - 10.1021/bi050736e ID - Oldfield2005 ER - TY - JOUR AU - Fuxreiter, M. AU - Tompa, P. AU - Simon, I. PY - 2007 DA - 2007// TI - Local structural disorder imparts plasticity on linear motifs JO - Bioinformatics VL - 23 UR - https://doi.org/10.1093/bioinformatics/btm035 DO - 10.1093/bioinformatics/btm035 ID - Fuxreiter2007 ER - TY - JOUR AU - Wright, P. E. AU - Dyson, H. J. PY - 1999 DA - 1999// TI - Intrinsically unstructured proteins: re-assessing the protein structure-function paradigm JO - J Mol Biol VL - 293 UR - https://doi.org/10.1006/jmbi.1999.3110 DO - 10.1006/jmbi.1999.3110 ID - Wright1999 ER - TY - JOUR AU - Dunker, A. K. AU - Obradovic, Z. PY - 2001 DA - 2001// TI - The protein trinity – linking function and disorder JO - Nat Biotechnol VL - 19 UR - https://doi.org/10.1038/nbt0901-805 DO - 10.1038/nbt0901-805 ID - Dunker2001 ER - TY - JOUR AU - Uversky, V. N. PY - 2002 DA - 2002// TI - Natively unfolded proteins: a point where biology waits for physics JO - Protein Sci VL - 11 UR - https://doi.org/10.1110/ps.4210102 DO - 10.1110/ps.4210102 ID - Uversky2002 ER - TY - JOUR AU - Dunker, A. K. AU - Cortese, M. S. AU - Romero, P. AU - Iakoucheva, L. M. AU - Uversky, V. N. PY - 2005 DA - 2005// TI - Flexible nets. The roles of intrinsic disorder in protein interaction networks JO - Febs J VL - 272 UR - https://doi.org/10.1111/j.1742-4658.2005.04948.x DO - 10.1111/j.1742-4658.2005.04948.x ID - Dunker2005 ER - TY - JOUR AU - Uversky, V. N. AU - Oldfield, C. J. AU - Dunker, A. K. PY - 2005 DA - 2005// TI - Showing your ID: intrinsic disorder as an ID for recognition, regulation and cell signaling JO - J Mol Recognit VL - 18 UR - https://doi.org/10.1002/jmr.747 DO - 10.1002/jmr.747 ID - Uversky2005 ER - TY - JOUR AU - Oldfield, C. J. AU - Meng, J. AU - Yang, J. Y. AU - Yang, M. Q. AU - Uversky, V. N. AU - Dunker, A. K. PY - 2008 DA - 2008// TI - Flexible nets: Disorder and induced fit in the associations of p53 and 14-3-3 with their partners JO - BMC Genomics VL - 9 UR - https://doi.org/10.1186/1471-2164-9-S1-S1 DO - 10.1186/1471-2164-9-S1-S1 ID - Oldfield2008 ER - TY - JOUR AU - Radhakrishnan, I. AU - Perez-Alvarado, G. C. AU - Parker, D. AU - Dyson, H. J. AU - Montminy, M. R. AU - Wright, P. E. PY - 1997 DA - 1997// TI - Solution structure of the KIX domain of CBP bound to the transactivation domain of CREB: a model for activator:coactivator interactions JO - Cell VL - 91 UR - https://doi.org/10.1016/S0092-8674(00)80463-8 DO - 10.1016/S0092-8674(00)80463-8 ID - Radhakrishnan1997 ER - TY - JOUR AU - Longhi, S. AU - Receveur-Brechot, V. AU - Karlin, D. AU - Johansson, K. AU - Darbon, H. AU - Bhella, D. AU - Yeo, R. AU - Finet, S. AU - Canard, B. PY - 2003 DA - 2003// TI - The C-terminal domain of the measles virus nucleoprotein is intrinsically disordered and folds upon binding to the C-terminal moiety of the phosphoprotein JO - J Biol Chem VL - 278 UR - https://doi.org/10.1074/jbc.M300518200 DO - 10.1074/jbc.M300518200 ID - Longhi2003 ER - TY - JOUR AU - Waksman, G. AU - Kominos, D. AU - Robertson, S. C. AU - Pant, N. AU - Baltimore, D. AU - Birge, R. B. AU - Cowburn, D. AU - Hanafusa, H. AU - Mayer, B. J. AU - Overduin, M. PY - 1992 DA - 1992// TI - Crystal structure of the phosphotyrosine recognition domain SH2 of v-src complexed with tyrosine-phosphorylated peptides JO - Nature VL - 358 UR - https://doi.org/10.1038/358646a0 DO - 10.1038/358646a0 ID - Waksman1992 ER - TY - JOUR AU - Pawson, T. AU - Gish, G. D. AU - Nash, P. PY - 2001 DA - 2001// TI - SH2 domains, interaction modules and cellular wiring JO - Trends Cell Biol VL - 11 UR - https://doi.org/10.1016/S0962-8924(01)02154-7 DO - 10.1016/S0962-8924(01)02154-7 ID - Pawson2001 ER - TY - JOUR AU - Liu, B. A. AU - Jablonowski, K. AU - Raina, M. AU - Arce, M. AU - Pawson, T. AU - Nash, P. D. PY - 2006 DA - 2006// TI - The human and mouse complement of SH2 domain proteins-establishing the boundaries of phosphotyrosine signaling JO - Mol Cell VL - 22 UR - https://doi.org/10.1016/j.molcel.2006.06.001 DO - 10.1016/j.molcel.2006.06.001 ID - Liu2006 ER - TY - JOUR AU - Pawson, T. AU - Nash, P. PY - 2000 DA - 2000// TI - Protein-protein interactions define specificity in signal transduction JO - Genes Dev VL - 14 ID - Pawson2000 ER - TY - JOUR AU - Schlessinger, J. PY - 1994 DA - 1994// TI - SH2/SH3 signaling proteins JO - Curr Opin Genet Dev VL - 4 UR - https://doi.org/10.1016/0959-437X(94)90087-6 DO - 10.1016/0959-437X(94)90087-6 ID - Schlessinger1994 ER - TY - JOUR AU - Nguyen, J. T. AU - Turck, C. W. AU - Cohen, F. E. AU - Zuckermann, R. N. AU - Lim, W. A. PY - 1998 DA - 1998// TI - Exploiting the basis of proline recognition by SH3 and WW domains: design of N-substituted inhibitors JO - Science VL - 282 UR - https://doi.org/10.1126/science.282.5396.2088 DO - 10.1126/science.282.5396.2088 ID - Nguyen1998 ER - TY - JOUR AU - Cohen, G. B. AU - Ren, R. AU - Baltimore, D. PY - 1995 DA - 1995// TI - Modular binding domains in signal transduction proteins JO - Cell VL - 80 UR - https://doi.org/10.1016/0092-8674(95)90406-9 DO - 10.1016/0092-8674(95)90406-9 ID - Cohen1995 ER - TY - JOUR AU - Pawson, T. PY - 1995 DA - 1995// TI - Protein modules and signalling networks JO - Nature VL - 373 UR - https://doi.org/10.1038/373573a0 DO - 10.1038/373573a0 ID - Pawson1995 ER - TY - JOUR AU - Anafi, M. AU - Rosen, M. K. AU - Gish, G. D. AU - Kay, L. E. AU - Pawson, T. PY - 1996 DA - 1996// TI - A potential SH3 domain-binding site in the Crk SH2 domain JO - J Biol Chem VL - 271 UR - https://doi.org/10.1074/jbc.271.35.21365 DO - 10.1074/jbc.271.35.21365 ID - Anafi1996 ER - TY - JOUR AU - Hunter, T. AU - Plowman, G. D. PY - 1997 DA - 1997// TI - The protein kinases of budding yeast: six score and more JO - Trends Biochem Sci VL - 22 UR - https://doi.org/10.1016/S0968-0004(96)10068-2 DO - 10.1016/S0968-0004(96)10068-2 ID - Hunter1997 ER - TY - JOUR AU - Plowman, G. D. AU - Sudarsanam, S. AU - Bingham, J. AU - Whyte, D. AU - Hunter, T. PY - 1999 DA - 1999// TI - The protein kinases of Caenorhabditis elegans: a model for signal transduction in multicellular organisms JO - Proc Natl Acad Sci USA VL - 96 UR - https://doi.org/10.1073/pnas.96.24.13603 DO - 10.1073/pnas.96.24.13603 ID - Plowman1999 ER - TY - JOUR AU - Morrison, D. K. AU - Murakami, M. S. AU - Cleghon, V. PY - 2000 DA - 2000// TI - Protein kinases and phosphatases in the Drosophila genome JO - J Cell Biol VL - 150 UR - https://doi.org/10.1083/jcb.150.2.F57 DO - 10.1083/jcb.150.2.F57 ID - Morrison2000 ER - TY - JOUR AU - Manning, G. AU - Whyte, D. B. AU - Martinez, R. AU - Hunter, T. AU - Sudarsanam, S. PY - 2002 DA - 2002// TI - The protein kinase complement of the human genome JO - Science VL - 298 UR - https://doi.org/10.1126/science.1075762 DO - 10.1126/science.1075762 ID - Manning2002 ER - TY - JOUR AU - Biondi, R. M. AU - Nebreda, A. R. PY - 2003 DA - 2003// TI - Signalling specificity of Ser/Thr protein kinases through docking-site-mediated interactions JO - Biochem J VL - 372 UR - https://doi.org/10.1042/bj20021641 DO - 10.1042/bj20021641 ID - Biondi2003 ER - TY - JOUR AU - Kemp, B. E. AU - Bylund, D. B. AU - Huang, T. S. AU - Krebs, E. G. PY - 1975 DA - 1975// TI - Substrate specificity of the cyclic AMP-dependent protein kinase JO - Proc Natl Acad Sci USA VL - 72 UR - https://doi.org/10.1073/pnas.72.9.3448 DO - 10.1073/pnas.72.9.3448 ID - Kemp1975 ER - TY - JOUR AU - Zetterqvist, O. AU - Ragnarsson, U. AU - Humble, E. AU - Berglund, L. AU - Engstrom, L. PY - 1976 DA - 1976// TI - The minimum substrate of cyclic AMP-stimulated protein kinase, as studied by synthetic peptides representing the phosphorylatable site of pyruvate kinase (type L) of rat liver JO - Biochem Biophys Res Commun VL - 70 UR - https://doi.org/10.1016/0006-291X(76)90648-3 DO - 10.1016/0006-291X(76)90648-3 ID - Zetterqvist1976 ER - TY - STD TI - Peri S, Navarro JD, Kristiansen TZ, Amanchy R, Surendranath V, Muthusamy B, Gandhi TK, Chandrika KN, Deshpande N, Suresh S: Human protein reference database as a discovery resource for proteomics. Nucleic Acids Res. 2004, D497-501. 10.1093/nar/gkh070. 32 Database ID - ref37 ER - TY - JOUR AU - Diella, F. AU - Cameron, S. AU - Gemund, C. AU - Linding, R. AU - Via, A. AU - Kuster, B. AU - Sicheritz-Ponten, T. AU - Blom, N. AU - Gibson, T. J. PY - 2004 DA - 2004// TI - Phospho.ELM: a database of experimentally verified phosphorylation sites in eukaryotic proteins JO - BMC Bioinformatics VL - 5 UR - https://doi.org/10.1186/1471-2105-5-79 DO - 10.1186/1471-2105-5-79 ID - Diella2004 ER - TY - STD TI - Pruitt KD, Tatusova T, Maglott DR: NCBI Reference Sequence (RefSeq): a curated non-redundant sequence database of genomes, transcripts and proteins. Nucleic Acids Res. 2005, D501-504. 33 Database ID - ref39 ER - TY - STD TI - O'Brien KP, Remm M, Sonnhammer EL: Inparanoid: a comprehensive database of eukaryotic orthologs. Nucleic Acids Res. 2005, D476-480. 33 Database ID - ref40 ER - TY - JOUR AU - Tatusov, R. L. AU - Fedorova, N. D. AU - Jackson, J. D. AU - Jacobs, A. R. AU - Kiryutin, B. AU - Koonin, E. V. AU - Krylov, D. M. AU - Mazumder, R. AU - Mekhedov, S. L. AU - Nikolskaya, A. N. PY - 2003 DA - 2003// TI - The COG database: an updated version includes eukaryotes JO - BMC Bioinformatics VL - 4 UR - https://doi.org/10.1186/1471-2105-4-41 DO - 10.1186/1471-2105-4-41 ID - Tatusov2003 ER - TY - JOUR AU - Obradovic, Z. AU - Peng, K. AU - Vucetic, S. AU - Radivojac, P. AU - Brown, C. J. AU - Dunker, A. K. PY - 2003 DA - 2003// TI - Predicting intrinsic disorder from amino acid sequence JO - Proteins VL - 53 UR - https://doi.org/10.1002/prot.10532 DO - 10.1002/prot.10532 ID - Obradovic2003 ER - TY - JOUR AU - Peng, K. AU - Vucetic, S. AU - Radivojac, P. AU - Brown, C. J. AU - Dunker, A. K. AU - Obradovic, Z. PY - 2005 DA - 2005// TI - Optimizing long intrinsic disorder predictors with protein evolutionary information JO - J Bioinform Comput Biol VL - 3 UR - https://doi.org/10.1142/S0219720005000886 DO - 10.1142/S0219720005000886 ID - Peng2005 ER - TY - JOUR AU - Melamud, E. AU - Moult, J. PY - 2003 DA - 2003// TI - Evaluation of disorder predictions in CASP5 JO - Proteins VL - 53 UR - https://doi.org/10.1002/prot.10533 DO - 10.1002/prot.10533 ID - Melamud2003 ER - TY - JOUR AU - Kashiwada, M. AU - Giallourakis, C. C. AU - Pan, P. Y. AU - Rothman, P. B. PY - 2001 DA - 2001// TI - Immunoreceptor tyrosine-based inhibitory motif of the IL-4 receptor associates with SH2-containing phosphatases and regulates IL-4-induced proliferation JO - J Immunol VL - 167 UR - https://doi.org/10.4049/jimmunol.167.11.6382 DO - 10.4049/jimmunol.167.11.6382 ID - Kashiwada2001 ER - TY - CHAP AU - Williams, R. M. AU - Obradovi, Z. AU - Mathura, V. AU - Braun, W. AU - Garner, E. C. AU - Young, J. AU - Takayama, S. AU - Brown, C. J. AU - Dunker, A. K. PY - 2001 DA - 2001// TI - The protein non-folding problem: amino acid determinants of intrinsic order and disorder BT - Pac Symp Biocomput ID - Williams2001 ER - TY - CHAP AU - Campen, A. W. R. AU - Brown, C. J. AU - Uversky, V. N. AU - Dunker, A. K. PY - 2008 DA - 2008// TI - TOP-IDP-Scale: A new amino acid scale measuring propensity for intrinsic disorder BT - Protein and Peptide Letters ID - Campen2008 ER - TY - JOUR AU - Brown, C. J. AU - Takayama, S. AU - Campen, A. M. AU - Vise, P. AU - Marshall, T. W. AU - Oldfield, C. J. AU - Williams, C. J. AU - Dunker, A. K. PY - 2002 DA - 2002// TI - Evolutionary rate heterogeneity in proteins with long disordered regions JO - J Mol Evol VL - 55 UR - https://doi.org/10.1007/s00239-001-2309-6 DO - 10.1007/s00239-001-2309-6 ID - Brown2002 ER - TY - JOUR AU - Pinna, L. A. AU - Ruzzene, M. PY - 1996 DA - 1996// TI - How do protein kinases recognize their substrates? JO - Biochim Biophys Acta VL - 1314 UR - https://doi.org/10.1016/S0167-4889(96)00083-3 DO - 10.1016/S0167-4889(96)00083-3 ID - Pinna1996 ER - TY - JOUR AU - Vucetic, S. AU - Obradovic, Z. AU - Vacic, V. AU - Radivojac, P. AU - Peng, K. AU - Iakoucheva, L. M. AU - Cortese, M. S. AU - Lawson, J. D. AU - Brown, C. J. AU - Sikes, J. G. PY - 2005 DA - 2005// TI - DisProt: a database of protein disorder JO - Bioinformatics VL - 21 UR - https://doi.org/10.1093/bioinformatics/bth476 DO - 10.1093/bioinformatics/bth476 ID - Vucetic2005 ER - TY - JOUR AU - Blom, N. AU - Gammeltoft, S. AU - Brunak, S. PY - 1999 DA - 1999// TI - Sequence and structure-based prediction of eukaryotic protein phosphorylation sites JO - J Mol Biol VL - 294 UR - https://doi.org/10.1006/jmbi.1999.3310 DO - 10.1006/jmbi.1999.3310 ID - Blom1999 ER - TY - JOUR AU - Blom, N. AU - Sicheritz-Ponten, T. AU - Gupta, R. AU - Gammeltoft, S. AU - Brunak, S. PY - 2004 DA - 2004// TI - Prediction of post-translational glycosylation and phosphorylation of proteins from the amino acid sequence JO - Proteomics VL - 4 UR - https://doi.org/10.1002/pmic.200300771 DO - 10.1002/pmic.200300771 ID - Blom2004 ER - TY - JOUR AU - Kim, J. H. AU - Lee, J. AU - Oh, B. AU - Kimm, K. AU - Koh, I. PY - 2004 DA - 2004// TI - Prediction of phosphorylation sites using SVMs JO - Bioinformatics VL - 20 UR - https://doi.org/10.1093/bioinformatics/bth382 DO - 10.1093/bioinformatics/bth382 ID - Kim2004 ER - TY - JOUR AU - Zhou, F. F. AU - Xue, Y. AU - Chen, G. L. AU - Yao, X. PY - 2004 DA - 2004// TI - GPS: a novel group-based phosphorylation predicting and scoring method JO - Biochem Biophys Res Commun VL - 325 UR - https://doi.org/10.1016/j.bbrc.2004.11.001 DO - 10.1016/j.bbrc.2004.11.001 ID - Zhou2004 ER - TY - JOUR AU - Xue, Y. AU - Li, A. AU - Wang, L. AU - Feng, H. AU - Yao, X. PY - 2006 DA - 2006// TI - PPSP: prediction of PK-specific phosphorylation site with Bayesian decision theory JO - BMC Bioinformatics VL - 7 UR - https://doi.org/10.1186/1471-2105-7-163 DO - 10.1186/1471-2105-7-163 ID - Xue2006 ER - TY - JOUR AU - Li, T. AU - Li, F. AU - Zhang, X. PY - 2008 DA - 2008// TI - Prediction of kinase-specific phosphorylation sites with sequence features by a log-odds ratio approach JO - Proteins VL - 70 UR - https://doi.org/10.1002/prot.21563 DO - 10.1002/prot.21563 ID - Li2008 ER - TY - JOUR AU - Dunker, A. K. AU - Uversky, V. N. PY - 2008 DA - 2008// TI - Signal transduction via unstructured protein conduits JO - Nat Chem Biol VL - 4 UR - https://doi.org/10.1038/nchembio0408-229 DO - 10.1038/nchembio0408-229 ID - Dunker2008 ER -