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Table 1 Most significant genes changed their expressions in zebrafish exposed to 500 μg/l BDE47 (FC > 10 or FC < 0.1)

From: High-throughput RNA sequencing reveals the effects of 2,2′,4,4′ -tetrabromodiphenyl ether on retina and bone development of zebrafish larvae

Gene symbol

Accession ID

BLAST

Fold change

Style

Counts_500

Counts_S

hsp70.2

XP_003198158

HSPA8

115.04

up

23095.632

200.760

pth1a

NM_212950

 

112.61

up

356.029

3.162

hsp70

NM_131397

HSPA8

111.46

up

21407.932

192.066

hsp70l

NM_001113589

HSPA8

75.27

up

47595.391

632.316

LOC100536983

XP_003200216

 

56.47

up

3123.057

55.328

fosl1a

NM_001161552

FOSL2

53.77

up

1997.507

37.149

Fosb

NM_001007312

FOSB

51.63

up

367.272

7.114

lepb

NM_001030186

 

49.47

up

391.007

7.904

MGC174857

NM_001103115

CTSV

37.93

up

59.963

1.581

hspb9

NM_001114705

 

27.69

up

7746.431

279.800

il12a

NM_001007107

 

26.87

up

42.474

1.581

mmp13a

NM_201503

MMP13

26.62

up

3219.247

120.930

si:ch211-199o1.2

NM_001100062

HSPA1L

24.38

up

1618.993

66.393

lepa

NM_001128576

 

23.71

up

112.430

4.742

LOC557301

XP_685429

CARTPT

21.11

up

5723.939

271.105

LOC100538045

XP_003197928

 

20.55

up

32.480

1.581

LOC570404

XP_698974

 

20.39

up

161.150

7.904

MGC174155

NM_001103118

CTSV

18.97

up

59.963

3.162

si:dkey-26 g8.4

XP_003199634

CTSV

18.97

up

59.963

3.162

LOC561147

XP_689643

PIM1

18.97

up

44.972

2.371

MGC174152

NM_001105680

CTSV

17.12

up

81.199

4.742

atf3

NM_200964

ATF3

16.79

up

7218.010

429.975

LOC100333562

XP_002666978

HIST1H4F

16.60

up

26.234

1.581

LOC100003896

NM_001115069

 

16.20

up

51.218

3.162

LOC100000332

XP_002662857

RNF182

15.21

up

4148.669

272.686

si:ch211-231 m23.4

XP_002665089

FFAR3

15.01

up

23.735

1.581

il11b

XP_003200597

 

15.01

up

23.735

1.581

si:dkey-239j18.3

XP_001341714

CTSV

15.01

up

23.735

1.581

LOC100332718

XP_002666833

GDPGP1

14.75

up

34.978

2.371

timp2b

NM_213296

TIMP2

14.53

up

3892.578

267.944

LOC100538016

XP_003200235

BTG3

14.07

up

1000.628

71.136

LOC797181

XP_001337638

CXCR1

13.83

up

43.723

3.162

LOC561346

XP_689846

PIM1

13.75

up

108.682

7.904

LOC100007777

XP_001346148

PIM1

12.12

up

86.196

7.114

LOC100334610

XP_002663270

 

12.05

up

228.608

18.969

ifnphi1

NM_207640

 

11.85

up

18.738

1.581

ptrh1

NM_001013330

PTRH1

11.78

up

595.879

50.585

mmp9

NM_213123

MMP9

11.61

up

5094.331

438.669

insb

NM_001039064

INS

11.59

up

54.966

4.742

sgk2b

NM_001076564

SGK1

11.30

up

938.166

82.991

si:dkey-85 k15.6

XP_001344298

 

11.06

up

34.978

3.162

LOC100537455

XP_003199799

ADTRP

11.06

up

26.234

2.371

LOC795066

XP_001335163

CASP10

10.75

up

42.474

3.952

LOC100007785

XP_001920525

PIM1

10.59

up

83.698

7.904

il1b

NM_212844

 

10.46

up

760.777

72.716

ctsl1b

NM_131198

CTSV

10.27

up

16.240

1.581

tcap

XP_684103

TCAP

10.22

up

4128.682

403.892

LOC561283

XP_001920442

PIM1

10.16

up

112.430

11.066

cyp2k6

NM_200509

CYP2C19

10.15

up

738.291

72.716

LOC100535212

XP_003199890

NXF1

0.099

down

1.249

12.646

LOC100537950

XP_003200691

 

0.099

down

1.249

12.646

LOC100151419

XP_001922180

IRGC

0.093

down

1.249

13.437

LOC794295

XP_001334228

CBLN4

0.088

down

7.495

85.363

LOC100536146

XP_003198781

TBX5

0.053

down

1.249

23.712

LOC100537396

XP_003198045

GIMAP7

0.049

down

1.249

25.293

LOC100538301

XP_003200448

TTLL5

0.045

down

1.249

27.664

cyp2aa8

NM_001006080

CYP2J2

0.040

down

2.498

63.232

si:dkey-58f10.12

XP_002662081

 

0.026

down

1.249

47.424

aqp8b

NM_001114910

AQP8

0

down

0

20.550

dicp1.1

LOC100007383

 

0

down

0

19.760

or115-11

NM_001130806

OR7C1

0

down

0

18.969

ora3

XP_002666147

 

0

down

0

16.598

LOC100535486

XP_003198138

AQP8

0

down

0

14.227

LOC100535815

XP_003198338

ZFP2

0

down

0

14.227

LOC567550

XP_005162589

G2E3

0

down

0

13.437

aadacl4

NM_001172642

AADACL4

0

down

0

12.646

LOC100535879

XP_003200240

 

0

down

0

11.856

LOC796876

XP_001334272

CXorf21

0

down

0

11.856

pou5f1

NM_131112

POU3F3

0

down

0

11.856

zranb3

zranb3

ZRANB3

0

down

0

10.275

LOC566574

XP_001919203

GIMAP7

0

down

0

10.275