Use of targeted SNP selection for an improved anchoring of the melon (Cucumis melo L.) scaffold genome assembly

BMC Genomics

Table 2 Markers and BAC clones used to identify and orient the 12 melon chromosomes

Chr	LG	Marker*	Scaffold	Scaffold position (bp)	BAC clone	Chr arm	Chr form
CME1	I	MC216	CM3.5scaffold00034	434,148 - 433,875	39G23	q-arm	sm
CME2	II	MC252	CM3.5scaffold00089	58,157 - 57,875	27K12	p-arm	ac
		MC340	CM3.5scaffold00025	1,148,058 - 1,146,502	2N3	q-arm
CME3	III	MC127	CM3.5scaffold00008	924,766 - 924,972	5P10	p-arm	sm
CME4	IV	CmEthImd	CM3.5scaffold00011	486,913 - 486,496	14C18	p-arm	sm
		A13E10	CM3.5scaffold01596	644,885 - 645,310	41C15	q-arm
CME5	V	MC233	CM3.5scaffold00022	4,179,585 - 4,180,293	58B10	p-arm	sm
		MC276	CM3.5scaffold00003	6,499,792 - 6,499,614	01N03	q-arm
CME6	VI	MC042	CM3.5scaffold00021	551,528 - 550,701	20H14	p-arm	sm
		MC069	CM3.5scaffold00006	671,768 - No hits	24I09	q-arm	sm
CME7	VII	MC125	CM3.5scaffold00031	3,442,638 - 3,442,244	12H24	p-arm	ac
		MC373	CM3.5scaffold00029	3,679,447 - 3,768,638	49P09	q-arm
CME8	VIII	F080	CM3.5scaffold00007	305,608 - 306,861	22K19	--	sm
CME9	IX	MC092	CM3.5scaffold00051	1,034,849 - 1,035,091	24H03	p-arm	sm
		EST1.17	CM3.5scaffold00005	No hits - 8,239,117	53P08	q-arm
CME10	X	CmEXP3	CM3.5scaffold00041	2,803,910 - 2,803,572	54E01	p-arm	ac
CME11	XI	MC326	CM3.5scaffold00045	1,714,833 - 1,715,049	51H20	p-arm	sm
		EST2.75	CM3.5scaffold00052	1,878,167 - 1,877,623	33O17	q-arm
CME12	XII	MC286	CM3.5scaffold00001	2,781,343 - 2,783,316	20F17	q-arm	m

*From reference [49].
The chromosome (chr) form was assigned according the centromere position: acrocentric (ac), submetacentric (sm) and metacentric (m).

ISSN: 1471-2164