Skip to main content

Table 5 Assembly statistics

From: Evaluation of methods to purify virus-like particles for metagenomic sequencing of intestinal viromes

  Published sequence FD1 FD2 DTT1 DTT2 CsCl1 CsCl2 MG1 MG2
P22 No. of contigs 1 1 1 1 1 1 1 1 1
P22 largest contig (bp)a 41660 41737 41737 41737 41737 41737 41659 41737 41737
P22 coverage (x fold) N/A 3651 3138 3925 4027 5489 4998 146 107
T7 No. of contigs 1 1 2 2 1 1 1 4 1
T7 largest contig (bp) 39937 39855 35301 35209 39344 39855 39855 35472 39855
T7 coverage (x fold) N/A 256 220 257 273 168 202 16 11
T3 No. of contigs 1 1 4 4 2 1 1 2 1
T3 largest contig (bp) 38209 37540 33483 33392 37540 36121 37541 33656 36120
T3 coverage (x fold) N/A 293 265 305 321 381 310 10 8
ɸVPE25 No. of contigs 1 1 1 1 1 1 1 1 2
ɸVPE25 largest contig (bp) 86524 86520 86522 86518 86542 86496 86505 86534 86540
ɸVPE25 coverage (x fold) N/A 256 225 253 284 1.9 2.3 55 30
M13 No. of contigs 1 7 4 8 4 1 0 1 0
M13 largest contig (bp) 6407 1085 900 814 586 230 0 268 0
M13 coverage (x fold) N/A 0.35 0.55 0.43 0.39 0.18 0 0.14 0
  1. a:Assemblies of the P22 genome from our datasets are slightly larger than the reference genome, which is likely due to the quasi-circular nature of the P22 genome, which makes it impossible for the assembly algorithm to determine the exact start and end of the genome.