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Table 2 Global sequence similarity of garlic abundant transcriptome to transcriptome databases for model and related species

From: Integrated transcriptome catalogue and organ-specific profiling of gene expression in fertile garlic (Allium sativum L.)

Reference Reference database Number of reference sequences Percent of hits in reference database
nrNCBI http://www.ncbi.nlm.nih.gov ~169.000.000 46.6
Arabidopsis http://www.arabidopsis.org 41,671 45.8
Oryza sativa www.phytozome.org 66,338 46.6
Allium cepa http://www.ncbi.nlm.nih.gov PRJNA175446 26,995 57.8
Allium cepa http://www.ncbi.nlm.nih.gov PRJNA175449 33,162 51.3
Allium sativum (renewal bud) http://www.ncbi.nlm.nih.gov PRJNA158177 79,143 77.8
Tulipa (leaves) [24,25] 52172 44.5*
Lilium (leaves) [24,25] 79980 45.3*
  1. *Based on 25,109 sequences specific to garlic leaves.