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Table 2 Global sequence similarity of garlic abundant transcriptome to transcriptome databases for model and related species

From: Integrated transcriptome catalogue and organ-specific profiling of gene expression in fertile garlic (Allium sativum L.)

Reference

Reference database

Number of reference sequences

Percent of hits in reference database

nrNCBI

http://www.ncbi.nlm.nih.gov

~169.000.000

46.6

Arabidopsis

http://www.arabidopsis.org

41,671

45.8

Oryza sativa

www.phytozome.org

66,338

46.6

Allium cepa

http://www.ncbi.nlm.nih.gov PRJNA175446

26,995

57.8

Allium cepa

http://www.ncbi.nlm.nih.gov PRJNA175449

33,162

51.3

Allium sativum (renewal bud)

http://www.ncbi.nlm.nih.gov PRJNA158177

79,143

77.8

Tulipa (leaves)

[24,25]

52172

44.5*

Lilium (leaves)

[24,25]

79980

45.3*

  1. *Based on 25,109 sequences specific to garlic leaves.
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BMC Genomics

ISSN: 1471-2164

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