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Table 2 Conserved motif analysis of 273 R2R3-BrMYB proteins

From: Genome-wide analysis of the R2R3-MYB transcription factor genes in Chinese cabbage (Brassica rapa ssp. pekinensis) reveals their stress and hormone responsive patterns

Clade

Motif

Width

E-value

Multilevel consensus sequence

1

1

21

1.30E-71

EDP[PA]T[SY]LSLSL[PS][WGL][ANP][ND]ES[EV][TS][ES]N

 

2

33

2.00E-212

GEFMTVVQEMI[KR][TA]EVRSYMA[ED][LM]QR[GN][NS][GV]GGG[GV][GS]G

2

3

41

4.50E-88

[MPV][HV]PCE[GQ][PN][LK][FIV]Q[AS][ACS][KR][PQ]D[SA][LA][AM][GL][KR][FL]L[QE][SG][LA][CY][SY]E[PR][FN][VI]P

[SQ]KCGHGC[CS][SNT]

 

4

14

4.00E-36

S[VL]LGPEFVDY[EL][ED]P[PS]

 

5

31

3.70E-57

[SDN][QY]EL[AI][SA]IAT[DE][LI][NS][NS][IL]AW[IL][RK]SGL[ED][NS][SA]SVRE[AM]E[QDE]

3

6

34

4.40E-34

[RG][KN]R[VFP][RM]EPET[ADT]F[PL][CDFY][TP]GG[YS][AT][MAT][ND]EQ[SN][PAG][QRT]L[WL][NC][YNS]P[FY]VE[SN]

5

7

21

1.70E-182

W[TS]RE[ED][ND][KI]AFE[NR]ALA[IV][YF][DP][DE][DE][ST][PE]

6

8

110

6.40E-149

ADVEA[QH]LR[KR]QDVARNKIA[EQ]R[RQ]DAPAAILQANK[LM]NDPE[AV]VRKRSKLMLPPPQISDHELEEIAKMGYASDLL

AENEEL[TM]EGSAATRALLANYSQTPRQGMTP[ML]RTPQRTPAGKGDAIMMEAENLARLRDSQTPLLGG[DE]NPELHPSDFTG

VTPRKKEIQTPNPMLTPSMTP

7

9

80

6.30E-67

GGA[GS]LTPR[IL]GLTPSR[DE]GSSF[AS][MV]TP[RK]GTPFRDELHINEDMDMHE[SN]AKLERQRREEAR[RM]SLRSGLTGLP[Q

L]P[RK]NEYQIVAQ[PA]P

8

10

101

4.60E-96

SVF[ML]SEL[VM]ECCRE[LV]EEGHRAWA[ED]HKKEAAWRLRRLELQLESEKT[SC]RQREK[MT]EEIE[AT]KMKALREEQK[M

N]AMEKIEGEYREQLVGLRRDAEAK[DE]QKLADQW[TS]S[KR]HIRLTKFLEQ[HQ]MGCR

9

11

72

9.30E-166

[NG][EQH][EG][VM]FLKKDD[PS]K[VA]T[ACN]LMQQAELLSSLA[QH]KVN[AS][DE]NT[ED]QSMENAWKVLQDF[LF]NK[SG]

KEND[LI][FL]RYG[ILF]P[DE][IM]DF[QK][LI][ED]E

 

12

37

3.30E-66

F[KR]DL[VI][EDG]DLRS[SGT][NY]E[DA][SN][QD][ALPSV]S[WLY]RQPDLHDSPASS[ED][YN]SSGS

 

13

20

3.60E-15

T[ITV][MI][PLTV][HD][PQS]SGD[KQ]TQ[QP][FLPQS][MLPS][SAMP][DGS][STP][QDP][TQ]

 

14

33

5.70E-66

F[NS]SP[VI]QVTPLFRSLA[AD]GIPSPQFSES[EV][RS][SIN][FH][LV][LT][KN]

 

15

21

1.40E-31

PCPSAN[PL]S[QK]PPPCKRVLL[DH]SL

10

16

16

1.20E-102

[CK][RS][SAP][NK][APY][PK]R[PN][SN][IL]L[QE][DN]YI[RK]S[IVL]TN[NG]N[EL]SxS[ST]V[EP]

14

17

29

2.50E-58

ATSS[CS][VAI]T[TS]SN[DNS][QP][FA][MEL][TI][YT][SD][YD][NDV]N[GN]N[VMN][GNV][NQ][GNQ][FT]G[VY]

15

18

33

2.30E-55

RA[EH][EQ]ES[DE]EDEV[KD]KWFKHLESELGLEE[DN]D[NS]QQ[QH]Q

16

19

39

4.80E-22

MES[DG]KE[TA][NC]G[GV][IV][CFG][EG][RT]E[SR]FGVM[KN]SPYENRI[SI]DWIS[EK][IS][SD][TA][DN][QI]

17

20

21

4.10E-34

[DN][GN][SM][SD][SC]S[ST][ST][FM][MS][PQ]DL[TM][TK]V[PS][HQ]F[MI]D

 

21

21

1.50E-93

[AY][YE]EDVTQDPMWN[MV]DDIWQF[RE]E

18

22

51

2.60E-50

[HS][HQ]SSEIND[QH][AV]ASTS[ANS]HNVFC[TA]QDQAM[ED]TYSPT[TP]TSYQHTNM[ED]FNYGN[YF]SA[AP]

20

23

29

2.00E-94

D[GD]YYSMDDIWREID[QH]S[GA][AV]NIIKPVKDIYY

 

24

28

2.70E-70

[FY]P[PN]LASP[TA]WESSL[ED]SIWNMDAD[EK]SK[MI]SS

21

25

27

1.30E-66

V[PA][VA][TP][SI][SP][DE][AH][NS][MV][NI][ED][ED][GN][AN][IL]W[DG][GS]LW[NS]LD[DL][ED][DG]

24

26

15

1.10E-43

WV[HL][DE]D[DE]FELS[ST]LT[MN]M

26

27

40

1.40E-35

[IP][TQ][TN]NN[PL]F[PT][TA][PG][HN]M[IF]SH[PS][CF][NI][DE]DFTP[YC]VDG[LI]YGVN[TA]G[LV]QGELY

 

28

29

7.40E-22

PPLEC[EQ]EGDWY[KN]A[DEN]IN[NS]H[LV][DA][ED][LMV][NK]TNG[AS]GN

 

29

24

2.90E-24

[VM]EE[CFY]WDLDQLM[NS]TEVPSF[YH]FNF[KN][QF]

27

30

41

6.80E-27

[TH][SH][HT][KH][DP]N[KD][LV][KQ][SW]PS[LQ][PT][DT][LI]P[AS][QS]T[IV][IS]P[IF][NQ]ET[LM][SQ][DS][LY][DL]DG[E

N][KN][LM][NI][VP]F[VW]

32

31

16

7.10E-50

[MT]F[LM]DY[CN][QL][DE][FY]GV[HE]D[FV][GP]F

33

32

81

7.80E-71

[ED]WF[LI]P[PA]SEN[TI]N[AGV]I[AP]C[AST]TSNNLN[LV][EQ][AV]LD[PL]CF[NS]SK[NT][ML]CHSESFKVGN[IMV][FLM]G

[MI]EN[AGS]SWE[IT]ENPKIGDWDLD[GS]LIDNNSSFPFLDFQV

34

33

21

1.30E-20

EDFGFCYDDKFSSFLN[SA][LV]IND

35

34

21

4.20E-26

[PR][PL][PQ][AEPT]KRR[LP]GRTSRS[AT]MKPK[TFI][HI]

 

35

21

4.70E-27

[HQ][QKV][NV][NI][DEN][AT][FLMS][TA]D[ED]F[IV]DWD[CF]VW[QR][EQ]G

 

36

48

7.20E-30

[DH]EKE[AGN][SP]D[SP][MV]VSWLL[DN]G[DE]DEATIG[KNQ]SNCE[NK][FS]GEPLDHD[ED]E[NS]ALVAWLLS

36

37

29

2.90E-197

[TR][TN][QH][EY][TP][ST][GTS][TV]YASS[TA][ED]NI[AS][KR]LL[QK][GND][WF][MTV][KS][DS][ST][PS][KS]

37

38

18

1.70E-23

[PT][GNP][LFNS][DEN][DEV][YF][ND]EW[LF][NSI][FY][FILM]DNQ[TA][YCFL]

38

39

32

1.40E-93

[KD][DQ][DS][CAM][MFT]S[FY]E[DN][FIV][GSL]A[DL][IV]D[ED]SFW[SN][ED][VAT][VL][SY][SVM][DQ][DNC]

 

40

36

1.00E-96

[EG][ILM][KLQ][QD][ER][NF][QSW][KEQ][LR][GS][SL][YDV][NGS]N[ES][KM][LGIV][YF][ND][DSH][DE]M[ED]FW[FY]DV

[LF][TAL][RS][ST][GRS][GR][EI][QEI]

40

41

29

8.40E-70

[DA][AL][TE][STD][LV][AL]K[AL]QL[LI]H[KNS]M[IL]Q[VI][LI][SNT][PTN][NK][NA][NIT][PNST][NST][ISP][SN][SD][FSI]

41

42

29

5.80E-58

Q[EDT][QS][TAQ][IFL][LS][KNS]LQ[TG]E[MA]A[KQ]L[QA]L[FL]QYLLQ[PM][PS][SNP][MS]S[NAM]

 

43

24

4.30E-54

A[ST]SS[SH][SG][QY][EG][SV][GA][AE][ST]AS[AV][ADY]WPDH[LC][LF]D[DE]

42

44

32

4.40E-200

[QL][SA][KP][NA][AS][AP]T[LT][SR]HMAQWESARLEAEARL[AS]RES[KM]L[LF]

 

45

20

1.50E-79

[QD][QL][QL]L[ED][SF]P[TI]S[TD][VD][DST][FM]S[EF][LMN][EKL]ENI

43

46

41

1.40E-124

[TP][ST][SP][ST][ST][STE][TS][SH][SF]S[SF]S[SP][TS][GS]S[AV][RC]LLNKLA[AT]GISSR[KQ]H[DAG]LDRIK[NT][VI][IL]

44

47

8

6.40E-100

M[VS]R[TK]PCC[KV]

  1. Significant motifs (e-value < e-100) of more than 10 amino acid length were predicted by MEME analysis. Motif ID, consensus sequences, width (amino acids), and number of R2R3-BrMYB proteins containing the motif and e-value of each predicted motif is given.