From: Genomic and phenotypic insights into the ecology of Arthrobacter from Antarctic soils
Product name | Gene symbol | Enzymes | COGs | 1 | 2 | 3 | 4 | 5 | 6 | 7 | 8 | 9 | 10 | 11 | 12 | 13 | 14 |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
SIGMA FACTORS | Â | Â | Â | Â | Â | Â | Â | Â | Â | Â | Â | Â | Â | Â | Â | Â | Â |
DNA-directed RNA polymerase sigma 24 | rpoE | - | COG1595 | 15 | 11 | 9 | 6 | 14 | 8 | 9 | 7 | 7 | 13 | 9 | 7 | 12 | 9 |
DNA-directed RNA polymerase sigma 28 | fliA | - | COG1191 | 1 | - | 2 | 1 | 1 | 1 | 1 | - | 1 | - | 1 | 2 | - | 2 |
DNA-directed RNA polymerase, sigma 70 | rpoD | - | COG0568 | 1 | 4 | 2 | 1 | 1 | 1 | 1 | 1 | 1 | 7 | 1 | 1 | 1 | 1 |
OXIDATIVE STRESS RESPONSE | Â | Â | Â | Â | Â | Â | Â | Â | Â | Â | Â | Â | Â | Â | Â | Â | Â |
Superoxide dismutase | sodA | EC:1.15.1.1 | COG0605 | 1 | 1 | 1 | 1 | 2 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 |
Cu/Zn superoxide dismutase | sodC | EC:1.15.1.1 | COG2032 | - | - | - | - | - | - | - | - | - | - | 1 | - | - | - |
Mn-containing catalase | - | - | COG3546 | 1 | - | - | - | 1 | - | - | - | 2 | - | 1 | 1 | - | - |
Catalase | katE | EC:1.11.1.6 | COG0753 | 2 | 2 | 2 | 1 | 2 | 3 | 2 | 1 | 3 | 2 | 2 | 2 | 2 | 1 |
Catalase (peroxidase I) | katG | EC:1.11.1.21 | COG0376 | - | - | 1 | 1 | - | 1 | - | - | - | - | - | - | - | - |
Peroxiredoxin | bcp | EC:1.11.1.15 | COG1225 | 2 | 3 | 3 | 1 | 3 | 3 | 2 | 5 | 4 | 4 | 3 | 4 | 4 | 6 |
Organic hydroperoxide reductase | osmC, ohr | - | COG1764 | 3 | 2 | 3 | 3 | 3 | 3 | 3 | 2 | 2 | 2 | 3 | 2 | 2 | 3 |
Thioredoxin | trx | EC:1.8.1.8 | COG3118 | 4 | 3 | 5 | 3 | 6 | 5 | 5 | 3 | 7 | 5 | 4 | 3 | 5 | 4 |
Thioredoxin reductase | trxB | EC:1.8.1.9 | COG0492 | 4 | 4 | 3 | 3 | 3 | 6 | 2 | 4 | 5 | 4 | 1 | 4 | 2 | 2 |
Thiol-disulfide isomerase and thioredoxins | trxA | - | COG0526 | 2 | 3 | 2 | - | 1 | 2 | 5 | 4 | 3 | 2 | 2 | 1 | 3 | 1 |
Redox-sensitive transcriptional activator | soxR | - | COG0789 | 1 | - | - | - | 1 | - | - | - | - | 2 | 1 | - | 1 | - |
OSMOPROTECTION | Â | Â | Â | Â | Â | Â | Â | Â | Â | Â | Â | Â | Â | Â | Â | Â | Â |
Glycogen metabolism | Â | Â | Â | Â | Â | Â | Â | Â | Â | Â | Â | Â | Â | Â | Â | Â | Â |
Glycogen synthase | glgA | EC:2.4.1.21 | COG0438 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 |
1,4-alpha-glucan branching enzyme | glgB | EC:2.4.1.18 | COG0296 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 |
ADP-glucose pyrophosphorylase | glgC | EC:2.7.7.27 | COG0448 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 2 | 2 | 1 | 1 | 2 | 1 | 1 |
Glucan phosphorylase | glgP | EC:2.4.1.1 | COG0058 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 |
Glycogen debranching enzyme | glgX | EC:3.2.1.33 | COG1523 | 2 | 2 | 2 | 3 | 2 | 1 | 2 | 2 | 2 | 2 | 2 | 2 | 2 | 2 |
Trehalose metabolism | Â | Â | Â | Â | Â | Â | Â | Â | Â | Â | Â | Â | Â | Â | Â | Â | Â |
Trehalose-6-phosphate synthase | otsA | EC:2.4.1.15 | COG0380 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 |
Trehalose-6-phosphatase | otsB | EC:3.1.3.12 | COG1877 | 2 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 |
Trehalose synthase | treS | EC:3.2.1.1, EC:5.4.99.16 | COG0366 | 2 | 1 | 2 | 3 | 2 | 3 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 |
Maltooligosyl trehalose synthase | treY | EC:5.4.99.15 | COG3280 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 |
Malto-oligosyltrehalose trehalohydrolase | treZ | EC:3.2.1.141 | COG0296 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 |
Glycine betaine/proline ABC transporter | Â | Â | Â | Â | Â | Â | Â | Â | Â | Â | Â | Â | Â | Â | Â | Â | Â |
glycine betaine/proline ABC transporter - ATP binding subunit | proV | - | COG1125 | 2 | 3 | 1 | 1 | 3 | 1 | 1 | 2 | 3 | 3 | 2 | 3 | 3 | 1 |
glycine betaine/proline ABC transporter - membrane subunit | proW | - | COG1174 | 2 | 6 | 2 | 2 | 3 | 2 | 2 | 4 | 6 | 6 | 4 | 6 | 6 | 2 |
glycine betaine/proline ABC transporter - periplasmic binding protein | proX | - | COG1732 | 2 | 3 | 1 | 1 | 1 | 1 | 1 | 2 | 3 | 3 | 2 | 3 | 3 | 1 |
COLD SHOCK RESPONSE | Â | Â | Â | Â | Â | Â | Â | Â | Â | Â | Â | Â | Â | Â | Â | Â | Â |
Cold shock' DNA binding domain | csd | - | COG1278 | 3 | 4 | 5 | 4 | 3 | 4 | 4 | 3 | 3 | 4 | 3 | 3 | 2 | 4 |
CspA-like cold acclimation protein | capA | - | COG1278 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | - | 1 | - | - | 1 | 1 |
Transcription elongation factor | nusA | - | COG0195 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 |
Polyribonucleotide nucleotidyltransferase | pnp | EC:2.7.7.8 | COG1185 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 |
Ribosome-binding factor A | rbfA | - | COG0858 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 2 | 1 | 1 | 1 | 1 | 1 |
Translation initiation factor 1 | infA | - | COG0361 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | - | 1 | 1 | 1 |
Translation initiation factor 2 | infB | - | COG0532 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 |
MEMBRANE ADAPTATIONS | Â | Â | Â | Â | Â | Â | Â | Â | Â | Â | Â | Â | Â | Â | Â | Â | Â |
Delta6-desaturase | desA | EC:1.14.19.3 | COG3239 | 3 | 1 | 1 | 2 | 3 | 1 | 2 | 2 | 1 | 5 | 3 | 6 | 4 | 2 |
Carotenoid biosynthesis | Â | Â | Â | Â | Â | Â | Â | Â | Â | Â | Â | Â | Â | Â | Â | Â | Â |
Isopentenyldiphosphate δ isomerase | idi | EC 5.3.3.2 | COG1443 | 1 | 1 | - | - | 1 | - | - | 1 | 1 | 1 | 1 | 1 | - | - |
Geranylgeranyl pyrophosphate synthase | crtE | EC:2.5.1.1, EC:2.5.1.10, EC:2.5.1.29 | COG0142 | 1 | 2 | - | - | 1 | 1 | - | 2 | 2 | 1 | 2 | 4 | 2 | 1 |
Phytoene synthase | crtB | - | COG1562 | 1 | 1 | - | - | 1 | - | - | 1 | 1 | 1 | 1 | 1 | - | - |
Phytoene desaturase | crtI | EC:1.3.99.26, EC:1.3.99.28, EC:1.3.99.29, EC:1.3.99.31 | COG1233 | 1 | 2 | - | - | 1 | 1 | 1 | 3 | 3 | 3 | 3 | 2 | 2 | 2 |
Lycopene elongase | crtEB | - | COG0382 | 1 | 1 | - | - | 1 | - | - | 1 | 1 | 1 | 1 | 1 | - | - |
Lycopene epsilon cyclase domain crtYe | crtYe | - | TIGR03462 | 1 | 1 | - | - | - | - | - | 1 | - | 1 | 1 | - | - | - |
Lycopene epsilon cyclase domain crtYf | crtYf | - | TIGR03462 | - | 1 | - | - | - | - | - | 1 | - | 1 | 1 | - | - | - |