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Table 2 Circadian rhythm and photosynthesis related genes expression in tomato leaves as influenced by RL and DC3000 alone or in combination treatment

From: RNA-seq analysis reveals the role of red light in resistance against Pseudomonas syringae pv. tomato DC3000 in tomato plants

Gene ID

DC3000

RL

RL + DC3000

(RL + DC3000)

-DC3000

Description

 

Log 2 FC

q -value

Log 2 FC

q -value

Log 2 FC

q -value

Log 2 FC

q -value

 

Circadian rhythm

         

Solyc12g056650

2.49

3.24E-01

7.91

9.16E-09

7.44

4.71E-07

4.95

4.15E-06

GIGANTEA 2

Solyc04g071990

1.02

3.28E-01

4.66

1.47E-09

5.54

1.73E-17

4.52

8.34E-15

GIGANTEA 1

Solyc03g115770

1.41

1.74E-03

2.80

4.40E-16

2.50

1.11E-11

1.09

1.68E-03

Timing of CAB expression 1/ Pseudo-response regulator 1

Solyc04g049680

−1.68

1.84E-02

4.36

9.75E-75

3.68

1.09E-39

5.36

3.07E-43

Pseudo-response regulator 3

Solyc10g005030

−0.09

5.18E-01

4.63

4.12E-03

4.73

6.83E-04

4.82

5.61E-03

Pseudo-response regulator 5

Solyc10g086000

0.14

4.99E-01

3.38

1.08E-06

3.73

3.03E-09

3.59

1.12E-07

Pseudo-response regulator 7

Solyc01g005300

1.45

1.70E-01

3.34

2.88E-04

3.74

2.45E-06

2.29

2.06E-03

Flavin-binding kelch domain F box protein

Solyc06g051680

0.90

3.05E-01

4.33

1.02E-11

3.70

2.30E-07

2.80

6.49E-05

Early flowering 4

Solyc10g005070

−0.90

3.02E-05

−1.87

6.50E-14

−4.66

1.00E-30

−3.76

1.45E-13

Circadian clock associated 11

Solyc10g005080

−1.43

3.27E-15

−2.24

8.66E-29

−3.72

2.07E-44

−2.29

9.68E-10

Late elongated hypocotyl

Solyc02g036370

−0.48

8.29E-10

−1.80

1.36E-82

−3.04

3.27E-141

−2.56

3.46E-79

Late elongated hypocotyl

Photosynthesis

         

Solyc05g010240

−1.69

3.60E-01

2.63

1.71E-01

−2.49

3.03E-01

−0.80

1.00E + 00

Rubisco large subunit-binding protein subunit beta

Solyc12g044280

−5.58

0.00E + 00

2.14

0.00E + 00

−5.51

0.00E + 00

0.07

1.00E + 00

Photosystem I reaction center subunit VI

Solyc02g071030

−4.98

2.14E-230

4.09

0.00E + 00

−3.38

2.61E-186

1.60

2.54E-07

Chlorophyll a/b binding protein

  1. Shown are the log2 fold-changes values (log2FC) and q-value (≤0.05) for genes expression by DC3000, RL, RL + DC3000, and (RL + DC3000)-DC3000 (comparison between RL + DC3000 and DC3000).