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Table 2 Circadian rhythm and photosynthesis related genes expression in tomato leaves as influenced by RL and DC3000 alone or in combination treatment

From: RNA-seq analysis reveals the role of red light in resistance against Pseudomonas syringae pv. tomato DC3000 in tomato plants

Gene ID DC3000 RL RL + DC3000 (RL + DC3000)
-DC3000
Description
  Log 2 FC q -value Log 2 FC q -value Log 2 FC q -value Log 2 FC q -value  
Circadian rhythm          
Solyc12g056650 2.49 3.24E-01 7.91 9.16E-09 7.44 4.71E-07 4.95 4.15E-06 GIGANTEA 2
Solyc04g071990 1.02 3.28E-01 4.66 1.47E-09 5.54 1.73E-17 4.52 8.34E-15 GIGANTEA 1
Solyc03g115770 1.41 1.74E-03 2.80 4.40E-16 2.50 1.11E-11 1.09 1.68E-03 Timing of CAB expression 1/ Pseudo-response regulator 1
Solyc04g049680 −1.68 1.84E-02 4.36 9.75E-75 3.68 1.09E-39 5.36 3.07E-43 Pseudo-response regulator 3
Solyc10g005030 −0.09 5.18E-01 4.63 4.12E-03 4.73 6.83E-04 4.82 5.61E-03 Pseudo-response regulator 5
Solyc10g086000 0.14 4.99E-01 3.38 1.08E-06 3.73 3.03E-09 3.59 1.12E-07 Pseudo-response regulator 7
Solyc01g005300 1.45 1.70E-01 3.34 2.88E-04 3.74 2.45E-06 2.29 2.06E-03 Flavin-binding kelch domain F box protein
Solyc06g051680 0.90 3.05E-01 4.33 1.02E-11 3.70 2.30E-07 2.80 6.49E-05 Early flowering 4
Solyc10g005070 −0.90 3.02E-05 −1.87 6.50E-14 −4.66 1.00E-30 −3.76 1.45E-13 Circadian clock associated 11
Solyc10g005080 −1.43 3.27E-15 −2.24 8.66E-29 −3.72 2.07E-44 −2.29 9.68E-10 Late elongated hypocotyl
Solyc02g036370 −0.48 8.29E-10 −1.80 1.36E-82 −3.04 3.27E-141 −2.56 3.46E-79 Late elongated hypocotyl
Photosynthesis          
Solyc05g010240 −1.69 3.60E-01 2.63 1.71E-01 −2.49 3.03E-01 −0.80 1.00E + 00 Rubisco large subunit-binding protein subunit beta
Solyc12g044280 −5.58 0.00E + 00 2.14 0.00E + 00 −5.51 0.00E + 00 0.07 1.00E + 00 Photosystem I reaction center subunit VI
Solyc02g071030 −4.98 2.14E-230 4.09 0.00E + 00 −3.38 2.61E-186 1.60 2.54E-07 Chlorophyll a/b binding protein
  1. Shown are the log2 fold-changes values (log2FC) and q-value (≤0.05) for genes expression by DC3000, RL, RL + DC3000, and (RL + DC3000)-DC3000 (comparison between RL + DC3000 and DC3000).