Skip to main content

Table 4 Calcium signalling- and redox-related genes expression in tomato leaves as influenced by RL and DC3000 alone or in combination treatment

From: RNA-seq analysis reveals the role of red light in resistance against Pseudomonas syringae pv. tomato DC3000 in tomato plants

Gene ID

DC3000

RL

RL + DC3000

(RL + DC3000) -DC3000

Description

 

Log 2 FC

q -value

Log 2 FC

q -value

Log 2 FC

q -value

Log 2 FC

q -value

 

Calcium

         

Solyc02g083850

5.79

4.32E-39

0.4

1.00E + 00

5.29

5.57E-28

−0.50

3.51E-02

Calcium-dependent protein kinase

Solyc06g053930

4.99

6.04E-04

0.14

1.00E + 00

5.91

1.68E-06

0.92

3.10E-01

Calmodulin

Solyc03g115930

3.65

3.04E-15

0.17

1.00E + 00

5.87

4.54E-80

2.22

6.46E-38

Calmodulin-like protein

Solyc07g040710

7.46

4.88E-14

0.78

1.00E + 00

7.04

3.39E-11

−0.42

5.09E-01

Calmodulin-binding protein

Solyc03g031630

n.d.

n.d.

n.d.

n.d.

7.52

2.70E-20

6.30

1.66E-19

Calcium-binding EF-hand family protein-like

Redox

         

Solyc09g011580

2

1.90E-06

2.09

8.49E-07

3.13

3.56E-20

1.13

4.86E-05

Glutathione S-transferase-like protein

Solyc05g006860

4.07

4.33E-33

−0.11

1.00E + 00

6.12

1.21E-149

2.05

7.81E-65

Thioredoxin H

Solyc08g083360

−3.04

2.15E-269

0.25

2.48E-06

−4.38

0.00E + 00

−1.34

3.32E-11

Ferredoxin

Solyc03g005190

−3.4

1.42E-119

0.1

5.72E-01

−3.05

1.53E-109

0.35

5.33E-01

Ferredoxin

Solyc12g013810

−3.31

1.15E-272

0.09

3.19E-01

−3.28

3.60E-272

0.04

1.00E + 00

Thioredoxin

Solyc07g063190

−3.48

0.00E + 00

0.27

4.05E-15

−3.36

0.00E + 00

0.12

8.17E-01

Thioredoxin

Solyc08g062970

−3.38

5.60E-05

1.05

2.70E-02

−0.1

4.77E-01

3.28

1.14E-03

Glutaredoxin

Solyc04g011880

−2.85

2.95E-16

−0.06

1.00E + 00

−5.39

1.17E-23

−2.54

3.13E-02

Glutaredoxin

Solyc01g099620

n.d.

n.d.

n.d.

n.d.

6.05

1.10E-08

3.16

1.37E-05

Respiratory burst oxidase-like protein

  1. Shown are the log2fold-changes values (log2FC) and q-value (≤0.05) for genes expression by DC3000, RL, RL + DC3000, and (RL + DC3000)-DC3000 (comparison between RL + DC3000 and DC3000). The n.d. means not detectable.