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Table 4 Calcium signalling- and redox-related genes expression in tomato leaves as influenced by RL and DC3000 alone or in combination treatment

From: RNA-seq analysis reveals the role of red light in resistance against Pseudomonas syringae pv. tomato DC3000 in tomato plants

Gene ID DC3000 RL RL + DC3000 (RL + DC3000) -DC3000 Description
  Log 2 FC q -value Log 2 FC q -value Log 2 FC q -value Log 2 FC q -value  
Calcium          
Solyc02g083850 5.79 4.32E-39 0.4 1.00E + 00 5.29 5.57E-28 −0.50 3.51E-02 Calcium-dependent protein kinase
Solyc06g053930 4.99 6.04E-04 0.14 1.00E + 00 5.91 1.68E-06 0.92 3.10E-01 Calmodulin
Solyc03g115930 3.65 3.04E-15 0.17 1.00E + 00 5.87 4.54E-80 2.22 6.46E-38 Calmodulin-like protein
Solyc07g040710 7.46 4.88E-14 0.78 1.00E + 00 7.04 3.39E-11 −0.42 5.09E-01 Calmodulin-binding protein
Solyc03g031630 n.d. n.d. n.d. n.d. 7.52 2.70E-20 6.30 1.66E-19 Calcium-binding EF-hand family protein-like
Redox          
Solyc09g011580 2 1.90E-06 2.09 8.49E-07 3.13 3.56E-20 1.13 4.86E-05 Glutathione S-transferase-like protein
Solyc05g006860 4.07 4.33E-33 −0.11 1.00E + 00 6.12 1.21E-149 2.05 7.81E-65 Thioredoxin H
Solyc08g083360 −3.04 2.15E-269 0.25 2.48E-06 −4.38 0.00E + 00 −1.34 3.32E-11 Ferredoxin
Solyc03g005190 −3.4 1.42E-119 0.1 5.72E-01 −3.05 1.53E-109 0.35 5.33E-01 Ferredoxin
Solyc12g013810 −3.31 1.15E-272 0.09 3.19E-01 −3.28 3.60E-272 0.04 1.00E + 00 Thioredoxin
Solyc07g063190 −3.48 0.00E + 00 0.27 4.05E-15 −3.36 0.00E + 00 0.12 8.17E-01 Thioredoxin
Solyc08g062970 −3.38 5.60E-05 1.05 2.70E-02 −0.1 4.77E-01 3.28 1.14E-03 Glutaredoxin
Solyc04g011880 −2.85 2.95E-16 −0.06 1.00E + 00 −5.39 1.17E-23 −2.54 3.13E-02 Glutaredoxin
Solyc01g099620 n.d. n.d. n.d. n.d. 6.05 1.10E-08 3.16 1.37E-05 Respiratory burst oxidase-like protein
  1. Shown are the log2fold-changes values (log2FC) and q-value (≤0.05) for genes expression by DC3000, RL, RL + DC3000, and (RL + DC3000)-DC3000 (comparison between RL + DC3000 and DC3000). The n.d. means not detectable.