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Table 5 Transcription factors, post-transcription- and defence-related genes expression in tomato leaves as influenced by RL and DC3000 alone or in combination treatment

From: RNA-seq analysis reveals the role of red light in resistance against Pseudomonas syringae pv. tomato DC3000 in tomato plants

Gene ID

DC3000

RL

RL + DC3000

(RL + DC3000) -DC3000

Description

 

Log 2 FC

q -value

Log 2 FC

q -value

Log 2 FC

q -value

Log 2 FC

q -value

 

Transcription factors

Solyc09g015770

3.96

3.47E-36

0.87

3.61E-01

5.08

1.07E-86

1.12

1.03E-15

WRKY70

Solyc08g067340

6.01

3.98E-11

0.71

1.00E + 00

8.17

2.77E-40

2.16

5.32E-21

WRKY60

Solyc01g095630

2.14

2.31E-13

0.78

1.35E-01

3.22

8.19E-42

1.08

1.85E-09

WRKY53

Solyc08g067360

6.58

1.49E-08

0.13

1.00E + 00

9.00

3.21E-33

2.42

1.17E-21

WRKY 18

Solyc02g073580

−1.80

6.62E-20

−2.88

1.84E-36

−4.48

2.09E-47

−2.68

1.04E-08

BZIP transcription factor

Solyc10g005070

−0.90

3.02E-05

−1.87

6.50E-14

−4.66

1.00E-30

−3.76

1.45E-13

MYB transcription factor (Fragment)

Solyc02g093420

−2.25

3.39E-02

−1.73

2.72E-01

−0.01

5.20E-01

2.24

1.79E-01

NAC domain class transcription factor

Solyc02g071730

2.77

6.80E-02

−1.81

1.00E + 00

4.92

5.74E-06

2.15

1.08E-02

MADS-box transcription factor AGAMOUS

Solyc02g063430

−0.74

4.20E-01

0.37

1.00E + 00

3.74

4.33E-06

4.48

1.86E-05

BHLH transcription factor

Post- transcription and defense genes

Solyc10g055790

6.33

3.84E-10

5.63

2.09E-06

5.10

4.71E-05

−1.23

2.39E-02

Chitinase 2

Solyc08g082670

−3.65

3.61E-03

2.22

2.29E-06

−1.01

1.60E-01

2.64

3.06E-01

Cellulose synthase

Solyc12g057070

3.21

1.39E-05

3.12

9.28E-05

4.50

1.04E-14

1.29

1.26E-03

UDP-glucuronosyltransferase

Solyc05g053400

−2.49

6.69E-02

3.87

1.89E-17

−1.89

1.12E-01

0.60

1.00E + 00

Glucosyltransferase

Solyc05g053120

−2.64

1.11E-01

4.20

1.68E-15

−2.07

1.53E-01

0.57

1.00E + 00

Glucosyltransferase

Solyc02g08735

6.26

n.d.

1.36

7.02E-04

7.03

4.84E-01

0.77

n.d.

Glycosyltransferase

Solyc03g043860

n.d.

n.d.

2.83

1.12E-02

0.21

n.d.

n.d.

n.d.

Nudix hydrolase 1

Solyc02g014250

n.d.

2.82E-01

4.30

4.49E-02

n.d.

n.d.

n.d.

n.d.

Blight resistance protein

Solyc07g009260

1.06

0.00E + 00

2.48

1.42E-45

n.d.

0.00E + 00

n.d.

1.41E-262

Defensin-like protein

Solyc08g074630

7.31

7.09E-18

2.54

8.12E-01

6.36

1.57E-10

−0.95

1.06E-01

Polyphenol oxidase

Solyc07g040690

2.58

7.82E-07

−0.49

1.00E-02

2.09

5.08E-29

−0.49

2.09E-11

Regulatory protein NPR1

Solyc00g272810

3.21

5.91E-03

2.30

1.00E + 00

5.13

1.59E-01

1.92

4.38E-01

N-acetyltransferase

Solyc04g082460

2.27

0.00E + 00

0.02

1.48E-54

1.25

0.00E + 00

−1.02

4.51E-01

Catalase

Solyc02g082760

−3.94

3.09E-272

−0.32

8.21E-01

−4.07

2.68E-256

−0.13

5.58E-01

Catalase

Solyc12g094620

−2.73

5.37E-202

0.05

9.09E-03

−2.57

8.06E-219

0.16

2.12E-01

Catalase

Solyc01g100630

−3.95

3.84E-10

−0.21

2.09E-06

−4.53

4.71E-05

−0.58

2.39E-02

Catalase

  1. Shown are the log2 fold-changes values (log2FC) and q-value (≤0.05) for genes expression by DC3000, RL, RL + DC3000, and (RL + DC3000)-DC3000 (comparison between RL + DC3000 and DC3000). The n.d. means not detectable.