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Table 5 Transcription factors, post-transcription- and defence-related genes expression in tomato leaves as influenced by RL and DC3000 alone or in combination treatment

From: RNA-seq analysis reveals the role of red light in resistance against Pseudomonas syringae pv. tomato DC3000 in tomato plants

Gene ID DC3000 RL RL + DC3000 (RL + DC3000) -DC3000 Description
  Log 2 FC q -value Log 2 FC q -value Log 2 FC q -value Log 2 FC q -value  
Transcription factors
Solyc09g015770 3.96 3.47E-36 0.87 3.61E-01 5.08 1.07E-86 1.12 1.03E-15 WRKY70
Solyc08g067340 6.01 3.98E-11 0.71 1.00E + 00 8.17 2.77E-40 2.16 5.32E-21 WRKY60
Solyc01g095630 2.14 2.31E-13 0.78 1.35E-01 3.22 8.19E-42 1.08 1.85E-09 WRKY53
Solyc08g067360 6.58 1.49E-08 0.13 1.00E + 00 9.00 3.21E-33 2.42 1.17E-21 WRKY 18
Solyc02g073580 −1.80 6.62E-20 −2.88 1.84E-36 −4.48 2.09E-47 −2.68 1.04E-08 BZIP transcription factor
Solyc10g005070 −0.90 3.02E-05 −1.87 6.50E-14 −4.66 1.00E-30 −3.76 1.45E-13 MYB transcription factor (Fragment)
Solyc02g093420 −2.25 3.39E-02 −1.73 2.72E-01 −0.01 5.20E-01 2.24 1.79E-01 NAC domain class transcription factor
Solyc02g071730 2.77 6.80E-02 −1.81 1.00E + 00 4.92 5.74E-06 2.15 1.08E-02 MADS-box transcription factor AGAMOUS
Solyc02g063430 −0.74 4.20E-01 0.37 1.00E + 00 3.74 4.33E-06 4.48 1.86E-05 BHLH transcription factor
Post- transcription and defense genes
Solyc10g055790 6.33 3.84E-10 5.63 2.09E-06 5.10 4.71E-05 −1.23 2.39E-02 Chitinase 2
Solyc08g082670 −3.65 3.61E-03 2.22 2.29E-06 −1.01 1.60E-01 2.64 3.06E-01 Cellulose synthase
Solyc12g057070 3.21 1.39E-05 3.12 9.28E-05 4.50 1.04E-14 1.29 1.26E-03 UDP-glucuronosyltransferase
Solyc05g053400 −2.49 6.69E-02 3.87 1.89E-17 −1.89 1.12E-01 0.60 1.00E + 00 Glucosyltransferase
Solyc05g053120 −2.64 1.11E-01 4.20 1.68E-15 −2.07 1.53E-01 0.57 1.00E + 00 Glucosyltransferase
Solyc02g08735 6.26 n.d. 1.36 7.02E-04 7.03 4.84E-01 0.77 n.d. Glycosyltransferase
Solyc03g043860 n.d. n.d. 2.83 1.12E-02 0.21 n.d. n.d. n.d. Nudix hydrolase 1
Solyc02g014250 n.d. 2.82E-01 4.30 4.49E-02 n.d. n.d. n.d. n.d. Blight resistance protein
Solyc07g009260 1.06 0.00E + 00 2.48 1.42E-45 n.d. 0.00E + 00 n.d. 1.41E-262 Defensin-like protein
Solyc08g074630 7.31 7.09E-18 2.54 8.12E-01 6.36 1.57E-10 −0.95 1.06E-01 Polyphenol oxidase
Solyc07g040690 2.58 7.82E-07 −0.49 1.00E-02 2.09 5.08E-29 −0.49 2.09E-11 Regulatory protein NPR1
Solyc00g272810 3.21 5.91E-03 2.30 1.00E + 00 5.13 1.59E-01 1.92 4.38E-01 N-acetyltransferase
Solyc04g082460 2.27 0.00E + 00 0.02 1.48E-54 1.25 0.00E + 00 −1.02 4.51E-01 Catalase
Solyc02g082760 −3.94 3.09E-272 −0.32 8.21E-01 −4.07 2.68E-256 −0.13 5.58E-01 Catalase
Solyc12g094620 −2.73 5.37E-202 0.05 9.09E-03 −2.57 8.06E-219 0.16 2.12E-01 Catalase
Solyc01g100630 −3.95 3.84E-10 −0.21 2.09E-06 −4.53 4.71E-05 −0.58 2.39E-02 Catalase
  1. Shown are the log2 fold-changes values (log2FC) and q-value (≤0.05) for genes expression by DC3000, RL, RL + DC3000, and (RL + DC3000)-DC3000 (comparison between RL + DC3000 and DC3000). The n.d. means not detectable.