Skip to main content

Table 8 Highly abundant transcripts of B. methanolicus MGA3 a

From: Transcriptome analysis of thermophilic methylotrophic Bacillus methanolicus MGA3 using RNA-sequencing provides detailed insights into its previously uncharted transcriptional landscape

Gene name b

Gene product

log-RPKM

Functional category

hps

3-hexulose-6-phosphate synthase

12,308

Carbohydrate transport and metabolism

phi

3-hexulose-6-phosphate isomerase

8,086

Carbohydrate transport and metabolism

rpiB

Ribose 5-phosphate isomerase

3,473

Carbohydrate transport and metabolism

pfkC

6-phosphofructokinase

1,695

Carbohydrate transport and metabolism

BMMGA3_16000

F0F1 ATP synthase subunit B

1,840

Energy production and conversion

yumB

NADH dehydrogenase-like protein YumB

1,689

Energy production and conversion

gltB

Glutamate synthase [NADPH] small chain

3,302

Amino acid transport and metabolism

ilvE

Putative aminotransferase

3,134

Amino acid transport and metabolism

argG

Argininosuccinate synthase

2,738

Amino acid transport and metabolism

argF

Ornithine carbamoyltransferase

2,434

Amino acid transport and metabolism

ilvC

Ketol-acid reductoisomerase

2,265

Amino acid transport and metabolism

argB

Acetylglutamate kinase

2,207

Amino acid transport and metabolism

argH

Argininosuccinate lyase

2,187

Amino acid transport and metabolism

BMMGA3_12455

L-aspartate oxidase

2,028

Amino acid transport and metabolism

gltA

Glutamate synthase [NADPH] large chain

1,780

Amino acid transport and metabolism

cysK

Cysteine synthase

1,758

Amino acid transport and metabolism

BMMGA3_01295

Putative transcriptional regulator, CopG family

2,378

Transcription

rpoA

DNA-directed RNA polymerase subunit alpha

1,670

Transcription

rpmC

50S ribosomal protein L29

7,670

Translation

BMMGA3_00355

hypothetical protein

4,650

Translation

rplR

50S ribosomal protein L18

4,412

Translation

rpsG

30S ribosomal protein S7

3,468

Translation

rpl14e

50S ribosomal protein L14e

2,607

Translation

rpsJ

30S ribosomal protein S10

2,511

Translation

rplS

50S ribosomal protein L19

2,249

Translation

rpsS

30S ribosomal protein S19

2,204

Translation

rplW

50S ribosomal protein L23

2,004

Translation

ybxF

50S ribosomal protein L7Ae

1,977

Translation

rpsU

30S ribosomal protein S21

1,786

Translation

BMMGA3_12500

hypothetical protein

1,733

Translation

rplV

50S ribosomal protein L22

1,710

Translation

ykuU

Thioredoxin-like protein

2,670

Posttranslational modification, secretion, and vesicular transport

groES

co-chaperonin GroES

2,498

Posttranslational modification, secretion, and vesicular transport

sodA

Superoxide dismutase [Mn]

2,511

Inorganic ion transport and metabolism

cysC

Adenylyl-sulfate kinase

1,925

Defense mechanisms

BMMGA3_06005

hypothetical protein

5,873

Function unknown

ssb

Single-stranded DNA-binding protein

4,261

Function unknown

BMMGA3_02575

hypothetical protein (duf3906)

1,757

Function unknown

BMMGA3_03940

small, acid-soluble spore proteins

1,728

Function unknown

rny

Ribonuclease Y

2,180

General function prediction only

BMMGA3_15110

acetyltransferase

2,110

General function prediction only

  1. aTranscript abundance was arbitrarily classified into 5 classes. The RNA abundance is reflected by the log-RPKM value. The data set revealed 21.6% non-transcribed genes, 3.8% genes with low RNA abundance (log-RPKM >0-16), 41.2% genes with middle (log-RPKM >16-160), 32.2% genes with high (log-RPKM >160-1600) and 1.3% genes with very high (log-RPKM >1600) transcript abundance.
  2. bThe genes are sorted according to their functional category.
Back to article page

BMC Genomics

ISSN: 1471-2164

Contact us