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Table 1 Summary data for redband trout samples including strain (LJ = Little Jacks Cr., K = Keithley Cr., LJxK = F1 crosses), temperature treatment (28°C treatment or 15°C control), sample day, sequencing reads (M = millions), and reference alignment statistics (transcriptome is abbreviated in column heading as Transc.)

From: Transcriptomic response to heat stress among ecologically divergent populations of redband trout

      

Mean

 

Mean

    

Quality

Transcr.

Match (M)/

Transc.

Match (%)/

Sample*

Strain

Temp

Day

Reads (M)

Match (M)

Strain

Match (%)

Strain

1

LJ

Trt-28C

1

28.1

4.6

7.0

16.2

23.1

2

LJ

Trt-28C

1

31.3

8.2

 

26.2

 

3

LJ

Trt-28C

1

30.1

8.1

 

26.8

 

4

LJ x K

Trt-28C

1

30.4

12.1

12.5

39.8

40.9

5

LJ x K

Trt-28C

1

27.6

11.6

 

42.1

 

6

LJ x K

Trt-28C

1

33.6

13.7

 

40.9

 

7

K

Trt-28C

1

32.4

13.1

12.1

40.4

40.3

8

K

Trt-28C

1

31.4

13.4

 

42.5

 

9

K

Trt-28C

1

25.9

9.9

 

38.0

 

10

LJ

Trt-28C

3

40.6

14.1

10.8

34.7

30.2

11

LJ

Trt-28C

3

34.8

9.8

 

28.3

 

12

LJ

Trt-28C

3

30.5

8.4

 

27.7

 

13

LJ x K

Trt-28C

3

31.3

9.1

9.0

29.0

26.1

14

LJ x K

Trt-28C

3

30.2

6.9

 

23.0

 

15

LJ x K

Trt-28C

3

41.7

10.9

 

26.3

 

16

K

Trt-28C

3

27.3

9.6

7.0

35.2

24.4

17

K

Trt-28C

3

28.3

7.6

 

27.0

 

18

K

Trt-28C

3

34.3

3.8

 

11.0

 

19

LJ

Trt-28C

7

29.3

12.4

9.1

42.4

29.2

20

LJ

Trt-28C

7

31.5

9.4

 

29.9

 

21

LJ

Trt-28C

7

35.1

5.4

 

15.5

 

22

LJ x K

Trt-28C

7

28.5

10.8

10.5

37.9

38.2

23

LJ x K

Trt-28C

7

26.4

9.9

 

37.6

 

24

LJ x K

Trt-28C

7

28.0

10.9

 

39.1

 

25

K

Trt-28C

7

37.4

6.8

5.2

18.2

16.6

26

K

Trt-28C

7

28.7

5.0

 

17.3

 

27

K

Trt-28C

7

27.8

4.0

 

14.2

 

28

LJ

Trt-28C

28

22.8

6.4

5.6

28.2

20.6

29

LJ

Trt-28C

28

31.2

7.5

 

24.0

 

30

LJ

Trt-28C

28

29.6

2.8

 

9.6

 

31

LJ x K

Trt-28C

28

43.0

0.5

3.7

1.1

14.9

32

LJ x K

Trt-28C

28

24.1

4.1

 

16.9

 

33

LJ x K

Trt-28C

28

24.3

6.4

 

26.5

 

34

K

Trt-28C

28

26.4

6.3

6.0

23.7

23.0

35

K

Trt-28C

28

25.4

7.3

 

28.7

 

36

K

Trt-28C

28

26.8

4.5

 

16.6

 

37

LJ

Con-15C

1

23.8

7.4

6.9

31.2

27.0

38

LJ

Con-15C

1

24.7

6.7

 

27.3

 

39

LJ

Con-15C

1

29.4

6.6

 

22.5

 

40

LJ x K

Con-15C

1

25.0

6.5

10.2

25.9

25.0

41

LJ x K

Con-15C

1

65.0

15.3

 

23.5

 

42

LJ x K

Con-15C

1

34.2

8.7

 

25.6

 

43

K

Con-15C

1

22.4

5.3

6.9

23.7

26.0

44

K

Con-15C

1

27.1

8.3

 

30.6

 

45

K

Con-15C

1

29.6

7.0

 

23.7

 

46

LJ

Con-15C

3

24.2

8.1

5.4

33.5

19.7

47

LJ

Con-15C

3

34.4

3.7

 

10.9

 

48

LJ

Con-15C

3

30.0

4.4

 

14.8

 

49

LJ x K

Con-15C

3

46.3

0.7

3.3

1.6

11.1

50

LJ x K

Con-15C

3

27.0

3.6

 

13.4

 

51

LJ x K

Con-15C

3

30.6

5.6

 

18.4

 

52

K

Con-15C

3

26.7

8.3

5.8

31.0

21.2

53

K

Con-15C

3

28.0

4.3

 

15.4

 

54

K

Con-15C

3

28.5

4.9

 

17.1

 

55

LJ

Con-15C

7

24.3

7.1

6.0

29.4

24.0

56

LJ

Con-15C

7

26.2

7.0

 

26.9

 

57

LJ

Con-15C

7

25.0

4.0

 

15.9

 

58

LJ x K

Con-15C

7

33.2

6.7

4.3

20.2

13.8

59

LJ x K

Con-15C

7

32.6

2.9

 

8.9

 

60

LJ x K

Con-15C

7

27.3

3.4

 

12.4

 

61

K

Con-15C

7

25.6

5.0

10.8

19.4

23.4

62

K

Con-15C

7

27.8

5.9

 

21.0

 

63

K

Con-15C

7

72.7

21.7

 

29.9

 

64

LJ

Con-15C

28

35.0

12.5

9.5

35.6

25.9

65

LJ

Con-15C

28

41.1

7.1

 

17.4

 

66

LJ

Con-15C

28

36.1

8.9

 

24.6

 

67

LJ x K

Con-15C

28

31.5

5.9

8.3

18.6

21.2

68

LJ x K

Con-15C

28

54.7

7.1

 

12.9

 

69

LJ x K

Con-15C

28

37.3

11.9

 

32.1

 

70

K

Con-15C

28

44.4

0.3

4.9

0.7

13.4

71

K

Con-15C

28

41.5

6.9

 

16.5

 

72

K

Con-15C

28

32.3

7.4

 

22.9

 

mean

--

--

--

31.96

7.53

7.5

24.1

24.1

  1. *Each sample includes 3 pooled RNA samples from the same rearing tank.