Table 1 Structural variants associated with coding sequences
AM183055 start | AM183055 end | 630Δ erm start | 630Δ erm end | Type | Description | Region | Gene name | Function | Details |
|---|---|---|---|---|---|---|---|---|---|
84143 | 89438 | Substitution | C > T | CD630_00580 | tuf1 | Elongation factor EFTu/EF1A | Synonymous | ||
84227 | 89522 | substitution | C > T | CD630_00580 | tuf1 | Elongation factor EFTu/EF1A | Synonymous | ||
103225 | 108520 | substitution | G > T | CD630_00730 | rplC | 50S ribosomal protein L3 | Synonymous | ||
610336 | 615631 | substitution | G > A | CD630_05140 | cwpV | Cell surface protein | Val > Ile | ||
610480 | 615775 | substitution | C > T | CD630_05140 | cwpV | Cell surface protein | Synonymous | ||
610563 | 610564 | 615859 | 615861 | insertion | 610563_610564ins | CD630_05140 | cwpV | Cell surface protein | In frame Ala insertion |
610570 | 615868 | substitution | A > G | CD630_05140 | cwpV | Cell surface protein | Ile > Val | ||
610638 | 615936 | substitution | C > T | CD630_05140 | cwpV | Cell surface protein | Synonymous | ||
610752 | 616050 | substitution | G > A | CD630_05140 | cwpV | Cell surface protein | Synonymous | ||
610840 | 616138 | substitution | C > T | CD630_05140 | cwpV | Cell surface protein | Synonymous | ||
610875 | 616173 | substitution | C > T | CD630_05140 | cwpV | Cell surface protein | Synonymous | ||
755776 | 755800 | 760995 | 760996 | deletion | 755776_755800del | CD630_06320 | Conserved hypothetical protein | In frame 8aa deletion in repeat region | |
1000995 | 1006274 | substitution | A > G | CD630_08260 | Putative ferric-uptake regulator | Thr > Ala | |||
1391850 | 1397129 | substitution | T > C | CD630_11900 | Putative acyl-CoA N-acyltransferase | Phe > Leu | |||
1413060 | 1413077 | 1418339 | 1418354 | duplication | 1413060_1413077dup | CD630_12140 | spo0A | Stage 0 sporulation protein A | 6aa (NVGNIE) duplication |
1607458 | 1607459 | 1612756 | insertion | 1607458_1607459insT | CD630_13880 | Putative transcriptional regulator | Restores transcriptional regulator | ||
2044514 | 2049813 | substitution | C > G | CD630_17670 | gapB | Glyceraldehyde-3-phosphate dehydrogenase GAPDH | Pro > Ala | ||
2137467 | 2183040 | 2142764 | 2142765 | deletion | 2137467_2183040del | CD630_18440 | Putative adhesin | Translocation of CTn5, CD1844 restored | |
2209236 | 2168961 | substitution | G > A | CD630_19070 | eutG | Ethanolamine iron-dependent Alcohol dehydrogenase | Gly > Glu | ||
2924655 | 2881973 | substitution | C > T | CD630_25320 | Aminotransferase, alanine--glyoxylate transaminase | Synonymous | |||
3034953 | 2992271 | substitution | C > A | CD630_26270 | Conserved hypothetical protein | Gly > Cys | |||
3080703 | 3038021 | substitution | C > T | CD630_26670 | ptsG-BC | PTS system, glucose-specific IIBC component | Val > Ile | ||
3686534 | 3686535 | 3643756 | 3643756 | insertion | 3686534_3686535insA | CD630_31561 | Conserved hypothetical protein | Restores conserved hypothetical protein | |
3967522 | 3967523 | 3924743 | 3970315 | insertion | 3967522_3967523insAM180355:g.2137467_2183040 | CD630_33930 | rumA | 23S rRNA (uracil-5-)-methyltransferase | Translocation of CTn5; fuses rumA (CD3393) to CD1844A |
4166495 | 4169292 | substitution | G > A | CD630_35650 | Transcriptional regulator, GntR family | Ala > Val | |||
12347 | 12348 | 12348 | 17642 | insertion | 12347_12348ins | multiple | rRNA/tRNA cluster | ||
2317627 | 2320033 | 2277358 | 2277359 | deletion | 2317633_2320041del | multiple | Loss of erythromycin resistance (Δerm) |