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Table 2 Top 20 most abundant clusters of transcripts present in leishmania exosomes

From: Small RNAs derived from tRNAs and rRNAs are highly enriched in exosomes from both old and new world Leishmania providing evidence for conserved exosomal RNA Packaging

L. donovani

L. braziliensis

Chr

Coordinates of genomic locus

Annotation

No. of reads

RNA biotype

Chr

Coordinates of genomic locus

Annotation

No. of reads

RNA biotype

27

1014367

1019133

LdBPK_27rRNA3

344191

28S rRNA

6

334041

334897

LmjF.27.rRNA.31

58906

28S rRNA

LdBPK_27rRNA4

LmjF.27.rRNA.34

LmjF.27.rRNA.13

LmjF.27.rRNA.22

LmjF.27.rRNA.29

LmjF.27.rRNA.31

LmjF.27.rRNA.33

LmjF.27.rRNA.42

27

1019947

1021495

LdBPK_27rRNA6

132730

18S rRNA

00

463646

464099

LbrM.27.rRNA1

11166

18S rRNA

15

312758

313248

LmjF.15.TRNAASP.01

65737

tRNA-Asp

15

324587

325394

LbrM.15.tRNA1

18229

tRNA-Asp

LmjF.15.TRNAGLU.01

tRNA-Glu

   

LbrM.15.tRNA2

tRNA-Glu

LmjF.09.5SrRNA.02

5S rRNA

   

LbrM.15.rRNA1

5S rRNA

LmjF.05.5SrRNA.01

      

LmjF.15.5SrRNA.01

      

24

715730

715801

LdBPK_24tRNA5

43207

tRNA-Asp

24

659346

659417

LbrM.24.tRNA5

30583

tRNA-Asp

17

328838

328909

LdBPK_17tRNA1

42601

tRNA-Asp

17

296223

296604

LbrM.17.tRNA1

30523

tRNA-Asp

LbrM.17.tRNA2

tRNA-Ser

LbrM.17.tRNA3

tRNA-Ala

24

658796

658976

LdBPK_24tRNA2

35611

tRNA-Gln

24

600448

600615

LbrM.24.tRNA2

8749

tRNA-Gln

09

429809

430355

LdBPK_09tRNA6

29246

tRNA-Glu

09

395278

395779

LbrM.09.tRNA3

4467

tRNA-Val

LmjF.09.TRNAARG.01

tRNA-Arg

   

LbrM.09.tRNA4

tRNA-His

LmjF.09.TRNAVAL.02

tRNA-Val

   

LbrM.09.rRNA1

5S rRNA

LmjF.05.5SrRNA.01

5S rRNA

   

LmjF.05.5SrRNA.01

 

LmjF.11.5SrRNA.03

    

LmjF.11.5SRRNA.03

 

LmjF.21.5SrRNA.01

    

LmjF.21.5SrRNA.02

 
      

09

403494

403565

LbrM.09.tRNA5

5226

tRNA-Glu

31

495812

496115

LdBPK_31tRNA3

18528

tRNA-Glu

31

582437

582738

LbrM.31.tRNA2

4719

tRNA-Gly

LbrM.31.tRNA3

tRNA-Glu

27

1019543

1019804

LdBPK_27rRNA5

18473

5.8S rRNA

      

11

156707

157038

LmjF.11.TRNAALA.01

15493

tRNA-Ala

11

63421

63678

LmjF.33.TRNAALA.01

3041

tRNA-Ala

LmjF.36.TRNALEU.01

tRNA-Leu

   

LmjF.11.TRNALEU.02

tRNA-Leu

27

1014054

1014340

LmjF.27.rRNA.47

14260

28S rRNA

      

LmjF.27.rRNA.48

      

23

230438

230509

LdBPK_23tRNA9

13814

tRNA-Gly

23

216842

216916

LbrM.23.tRNA9

3679

tRNA-Gly

36

1630332

1630403

LdBPK_36tRNA2

11529

tRNA-Gln

     

05

360707

361335

LdBPK_05snRNA1

9971

snRNA

05

349991

350587

LbrM.05.rRNA1-1

6306

5S rRNA

LbrM.05.ncRNA1-1

ncRNA

33

104560

104930

LdBPK_33tRNA1

9352

tRNA-Ala

33

105787

105859

LbrM.33.tRNA1

5730

tRNA-Arg

LdBPK_33tRNA2

tRNA-Arg

     

LdBPK_33tRNA3

       

23

229645

229857

LdBPK_23tRNA5

8487

tRNA-Leu

35

2472707

2472788

LbrM.35.tRNA4

2592

tRNA-Leu

LdBPK_23tRNA6

tRNA-Thr

     

16

445957

446028

LdBPK_161tRNA1

7916

tRNA-Gln

16

442089

442160

LbrM.16.tRNA1

8695

tRNA-Gln

23

230585

230656

LdBPK_23tRNA10

7804

tRNA-Trp

23

216992

217063

LbrM.23.tRNA10

3657

tRNA-Trp

      

21

430678

430798

LbrM.21.rRNA1

3273

5S rRNA

  1. Reads were clustered into genomic loci based on Bowtie 2 alignments with reference genomes (as described in Methods) to identify the RNA biotypes that were most abundant in exosomes. The details of the top 20 clusters with the highest numbers of reads falling into them are listed. Clusters of reads in the L. donovani library are listed in descending order of abundance, with the homologous cluster of reads in the L. braziliensis library given in the same row. Chr = chromosome number, annotation = annotation in reference genomes (LdBPK = L. donovani, LbrM = L. braziliensis or LmjF = L. major) followed by the gene name, No. of reads = number of reads from the respective library falling into this cluster, RNA biotype = type(s) of RNA that is annotated in the reference genomes in this region.
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BMC Genomics

ISSN: 1471-2164

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