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Table 3 Intergenic regions coding for putative novel transcripts in exosomes

From: Small RNAs derived from tRNAs and rRNAs are highly enriched in exosomes from both old and new world Leishmania providing evidence for conserved exosomal RNA Packaging

L. donovani

L. braziliensis

Name

Coordinates

No. of reads

No. of ORF

Name

Coordinates

No. of reads

No. of ORF

LdBPK_301180_leftof

379397

380435

363

7

LbrM.30.1240_leftof

394563

397304

317

13

LdBPK_291610_leftof

706385

707360

181

9

LbrM.29.1600_leftof

663702

664543

103

7

LdBPK_360420_leftof

109068

109733

139

3

LbrM.35.0480_leftof

132138

133299

185

5

LdBPK_363000_leftof

1183324

1183522

132

1

LbrM.35.3080_leftof

1176690

1176833

36

1

LdBPK_362290_leftof

872006

872406

89

5

LbrM.35.2400_leftof

892711

895894

29

28

LdBPK_313190_leftof

1452630

1452719

83

1

LbrM.31.3490_leftof

1508257

1510948

0

N.A.

LdBPK_040550_leftof

225336

230737

80

8

LbrM.04.0610_leftof

229925

233378

111

25

LdBPK_131560_leftof

555895

556192

75

2

LbrM.13.1200_leftof

433509

433481

0

N.A.

LdBPK_364270_leftof

1570740

1570991

57

1

LbrM.35.4310_leftof

1563654

1563940

29

2

LdBPK_366120_leftof

2270195

2272110

49

13

LbrM.35.6160_leftof

2242345

2244214

153

14

LdBPK_330560_leftof

173136

173362

40

0

LbrM.33.0550_leftof

184438

184751

19

1

LdBPK_366590_leftof

1903364

1906720

0

N.A.

LbrM.35.6630_leftof

2438694

2438825

155

0

  1. List of 12 intergenic regions identified with numbers of reads mapping to them listed by descending order of abundance in the L. donovani library, with the homologous genomic region in the L. braziliensis library given in the same row. Names are derived from the annotated genes adjacent to the intergenic region plus the designation “_leftof”, indicating that the intergenic region is on the left side of the annotated gene on the same strand, regardless of transcriptional direction. There is 75% overlap of intergenic regions coding for novel transcripts in the L. donovani and L. braziliensis libraries. ORF, open reading frame. N.A., not applicable.
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BMC Genomics

ISSN: 1471-2164

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