Genomic correlates of recombination rate and its variability across eight recombination maps in the western honey bee (Apis mellifera L.)

Ross, Caitlin R; DeFelice, Dominick S; Hunt, Greg J; Ihle, Kate E; Amdam, Gro V; Rueppell, Olav

doi:10.1186/s12864-015-1281-2

Table 2 Bivariate correlation coefficients between recombination rate and all di-nucleotide motifs that were significantly* correlated with local recombination rate in the eight different maps, its average and variance

From: Genomic correlates of recombination rate and its variability across eight recombination maps in the western honey bee (Apis mellifera L.)

Motif:	Solignac map	Grooming map	VSH map	JH map	HBC map	LBC map	R3 map	R5 map	Average recombination rate	Variance of recombination rate
AA	-0.10	-0.10	-0.15	-0.10	---	---	---	---	-0.13	---
AC	0.06	0.17	0.19	0.12	---	0.08	0.10	---	0.17	---
AG	0.09	0.21	0.24	0.17	---	0.09	0.10	---	0.22	---
AT	-0.11	-0.16	-0.20	-0.15	---	-0.09	-0.08	---	-0.18	---
CA	---	---	---	---	---	---	---	---	---	---
CC	0.14	0.26	0.33	0.22	---	0.16	0.14	---	0.30	---
CG	0.14	0.27	0.33	0.23	---	0.17	0.16	---	0.32	---
CT	0.08	0.20	0.23	0.16	---	0.10	0.11	---	0.21	---
GA	0.09	0.24	0.26	0.19	---	0.11	0.11	---	0.24	---
GC	0.14	0.25	0.32	0.22	---	0.17	0.15	---	0.30	---
GG	0.14	0.27	0.33	0.23	---	0.16	0.14	---	0.31	---
GT	0.06	0.18	0.20	0.13	---	0.10	0.11	---	0.19	---
TA	-0.11	-0.18	-0.22	-0.17	---	-0.10	-0.09	---	-0.20	---
TC	0.08	0.23	0.26	0.19	---	0.12	0.12	---	0.24	---
TG	---	---	---	---	---	---	---	---	---	---
TT	-0.10	-0.10	-0.14	-0.10	---	---	---	---	-0.12	---
CG/GC ratio	0.09	0.23	0.20	0.17	---	0.10	0.11	---	0.23	---

*Significance for FDR < 0.05; FDR < 0.01 is indicated in bold.

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ISSN: 1471-2164

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