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Table 1 Summary of sequence reads for each line

From: Comparative whole-genome analyses of selection marker–free rice-based cholera toxin B-subunit vaccine lines and wild-type lines

Line Total reads Mapped reads Mapping rate (%) Genome coverage (bp) Coverage rate (%) Depth (fold)
50A 384,384,291 375,891,543 97.8 371,762,264 99.6 101.3
51A 362,591,974 352,782,360 97.3 371,570,800 99.6 95.1
55A 356,620,373 349,808,296 98.1 369,691,614 99.0 94.7
WT1 342,044,404 332,246,878 97.1 371,589,770 99.6 89.4
WT2 323,436,829 314,249,500 97.2 371,575,970 99.6 84.3
  1. Mapping rate represents the ratio of the number of mapped reads to that of total reads. Covered length represents the number of genome bases covered with at least one read. Coverage rate is the ratio of covered length to the total length of the rice reference genome (373,245,519 bps, IRGSP-1.0, build 5 [21]). Depth was calculated by dividing the total length of all mapped reads (100 bps for each read) by covered length.