Skip to main content

Table 2 Distribution of variants among MucoRice-CTB and WT lines

From: Comparative whole-genome analyses of selection marker–free rice-based cholera toxin B-subunit vaccine lines and wild-type lines

  Total      
   Variant consistency, quality ≥30, covered ≥4 times in all lines     
    Line-specific
Line    Total (Mutation rate) Ins Del SNPs
50A 19,802 12,706 798 (2.15 × 10-6) 88 222 488
51A 19,612 12,586 619 (1.67 × 10-6) 54 224 341
55A 19,398 12,736 842 (2.28 × 10-6) 96 263 483
WT1 19,103 12,477 524 (1.41 × 10-6) 47 170 307
WT2 20,623 12,927 826 (2.22 × 10-6) 79 282 465
  1. Three filters for improving the accuracy of each variant (described in the Methods section) were applied to the total variants (shown as “Total” in the second column). Line-specific variants such as Ins, insertions; Del, deletions and SNPs were selected in accordance with the sharing profile from filtered variants. Mutation rates represent probability of a mutation per nucleotide.