| |
Total
| | | | | |
|---|
| | |
Variant consistency, quality ≥30, covered ≥4 times in all lines
| | | | |
|---|
| | | |
Line-specific
|
|---|
|
Line
| | |
Total (Mutation rate)
|
Ins
|
Del
|
SNPs
|
|---|
|
50A
|
19,802
|
12,706
|
798 (2.15 × 10-6)
|
88
|
222
|
488
|
|
51A
|
19,612
|
12,586
|
619 (1.67 × 10-6)
|
54
|
224
|
341
|
|
55A
|
19,398
|
12,736
|
842 (2.28 × 10-6)
|
96
|
263
|
483
|
|
WT1
|
19,103
|
12,477
|
524 (1.41 × 10-6)
|
47
|
170
|
307
|
|
WT2
|
20,623
|
12,927
|
826 (2.22 × 10-6)
|
79
|
282
|
465
|
- Three filters for improving the accuracy of each variant (described in the Methods section) were applied to the total variants (shown as “Total” in the second column). Line-specific variants such as Ins, insertions; Del, deletions and SNPs were selected in accordance with the sharing profile from filtered variants. Mutation rates represent probability of a mutation per nucleotide.
