Impact (percentage in MucoRice-CTBs/WTs) | Effect type | Number of line-specific classified variants | ||||
---|---|---|---|---|---|---|
50A | 51A | 55A | WT1 | WT2 | ||
HIGH (1.4%/1.2%) | FRAME_SHIFT | 5 | 8 | 12 | 10 | 5 |
SPLICE_SITE_ACCEPTOR | 1 | 0 | 0 | 1 | 0 | |
SPLICE_SITE_DONOR | 2 | 0 | 0 | 0 | 0 | |
START_LOST | 0 | 0 | 0 | 0 | 0 | |
STOP_GAINED | 1 | 0 | 0 | 0 | 0 | |
STOP_LOST | 2 | 0 | 0 | 0 | 0 | |
MODERATE (3.0%/1.7%) | CODON_CHANGE_PLUS_CODON_DELETION | 0 | 1 | 1 | 0 | 2 |
CODON_CHANGE_PLUS_CODON_INSERTION | 0 | 0 | 0 | 0 | 0 | |
CODON_DELETION | 2 | 1 | 5 | 1 | 5 | |
CODON_INSERTION | 0 | 1 | 0 | 0 | 0 | |
NON_SYNONYMOUS_CODING | 21 | 15 | 21 | 8 | 7 | |
LOW (1.4%/1.3%) | NON_SYNONYMOUS_START | 0 | 0 | 0 | 0 | 0 |
SPLICE_SITE_REGION | 3 | 0 | 0 | 0 | 3 | |
START_GAINED | 3 | 1 | 0 | 1 | 0 | |
SYNONYMOUS_CODING | 13 | 4 | 7 | 7 | 7 | |
SYNONYMOUS_STOP | 1 | 0 | 0 | 0 | 0 | |
MODIFIER (94.2%/95.8%) | DOWNSTREAM | 307 | 237 | 337 | 205 | 323 |
INTERGENIC | 395 | 305 | 404 | 250 | 407 | |
INTRAGENIC | 0 | 0 | 0 | 0 | 0 | |
INTRON | 30 | 31 | 40 | 29 | 56 | |
UPSTREAM | 8 | 6 | 10 | 7 | 4 | |
UTR_3_PRIME | 1 | 4 | 2 | 0 | 2 | |
UTR_5_PRIME | 3 | 5 | 3 | 5 | 5 |