Table 2 Comparison of CGI methylation between H1 and sperm cells
From: Factors to preserve CpG-rich sequences in methylated CpG islands
Sperm methylation | ||||||
|---|---|---|---|---|---|---|
CGI | HI methylation | Gene | CGI number | Sperm sample | LM | HM |
5'CGI | HM | coding | 985 | BCMsample 25783 | 531 | 395 |
BCMsample 25784 | 534 | 395 | ||||
Molaro_metylation | 523 | 384 | ||||
non- coding | 224 | BCMsample 25783 | 102 | 100 | ||
BCMsample 25784 | 102 | 105 | ||||
Molaro_metylation | 105 | 96 | ||||
LM | coding | 10733 | BCMsample 25783 | 10693 | 6 | |
BCMsample 25784 | 10683 | 7 | ||||
Molaro_metylation | 10721 | 5 | ||||
non- coding | 355 | BCMsample 25783 | 349 | 0 | ||
BCMsample 25784 | 350 | 0 | ||||
Molaro_metylation | 355 | 0 | ||||
3′CGI | HM | coding | 1047 | BCMsample 25783 | 358 | 622 |
BCMsample 25784 | 348 | 617 | ||||
Molaro_metylation | 337 | 613 | ||||
non-coding | 74 | BCMsample 25783 | 30 | 41 | ||
BCMsample 25784 | 26 | 40 | ||||
Molaro_metylation | 24 | 37 | ||||
LM | coding | 455 | BCMsample 25783 | 445 | 3 | |
BCMsample 25784 | 411 | 4 | ||||
Molaro_metylation | 448 | 3 | ||||
non coding | 61 | BCMsample 25783 | 61 | 0 | ||
BCMsample 25784 | 60 | 0 | ||||
Molaro_metylation | 61 | 0 | ||||
Intragenic CGI | HM | coding | 2481 | BCMsample 25783 | 581 | 1706 |
BCMsample 25784 | 556 | 1727 | ||||
Molaro_metylation | 559 | 1628 | ||||
non-coding | 79 | BCMsample 25783 | 48 | 22 | ||
BCMsample 25784 | 49 | 26 | ||||
Molaro_metylation | 52 | 20 | ||||
LM | coding | 862 | BCMsample 25783 | 848 | 7 | |
BCMsample 25784 | 845 | 6 | ||||
Molaro_metylation | 851 | 3 | ||||
non-coding | 98 | BCMsample 25783 | 98 | 0 | ||
BCMsample 25784 | 95 | 0 | ||||
Molaro_metylation | 98 | 0 | ||||
Intergenic CGI | HM | - | 1367 | BCMsample 25783 | 805 | 422 |
BCMsample 25784 | 800 | 439 | ||||
Molaro_metylation | 815 | 379 | ||||
LM | - | 1505 | BCMsample 25783 | 1480 | 4 | |
BCMsample 25784 | 1471 | 5 | ||||
Molaro_metylation | 1492 | 0 | ||||