Comparative analysis of the silk gland transcriptomes between the domestic and wild silkworms

BMC Genomics

Table 1 Summary of the sequence assembly after Illumina sequencing

Sample name	Raw reads	Clean reads	Clean bases (Gb)	Error rate (%)	Q20 (%)	Q30 (%)	GC content (%)
D_CH_1	28689935	27351142	2.74	0.04	97.24	91.56	50.89
D_CH_2	28689935	27351142	2.74	0.06	94.32	86.63	50.98
D_CY_1	29857247	28748042	2.87	0.03	97.66	92.56	48.77
D_CY_2	29857247	28748042	2.87	0.05	95.17	88.2	48.87
W_AKBH_1	27042449	25978481	2.6	0.04	96.9	90.75	52.46
W_AKBH_2	27042449	25978481	2.6	0.06	94.03	86.19	52.96
W_AKSQ_1	31530647	30344925	3.03	0.03	97.66	92.52	49.08
W_AKSQ_2	31530647	30344925	3.03	0.04	95.53	88.91	49.17

The numbers 1 and 2 at the end of the sample name represent left and right ends (pair-end sequencing), respectively. Gb: Giga base; Q20: percentage of bases with a Phred value of at least 20. Q30: percentage of bases with a Phred value of at least 30.

ISSN: 1471-2164