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Table 1 Primer for quantitative real-time PCR

From: De novo assembly and transcriptome analysis of Atlantic salmon macrophage/dendritic-like TO cells following type I IFN treatment and Salmonid alphavirus subtype-3 infection

Primer name

Sequence

GeneBank Acc

TLR3-F

TTTGATGAGTCTCCGCCAACTCCA

BK008646

TLR3-R

AATCTGCGAGGGACACAAAGGTCT

 

LPG2-F

GTGGCAGGCAATGGGGAATG

FN396358

LPG2-R

CCTCCAGTGTAATAGCGTATCAATCC

 

Viperin-F

GTGGAAGAGGCCATTCAGTTCAGT

BT047340

Viperin-R

AGTGCAGTTATACAGGCGGAA

 

CCL19-F

TGGACCGCCTCATCAAGAAGTGC

BT125321

CCL19-R

ATGGGGGTGGAGGTGGTGGTGTT

 

Galectin9-F

TTAACCTGCGTTTCAACTCGG

BT046997

Galectin9-R

TGGACCCCACTGTTCCTTCA

 

Galectin3-binding-F

CCAGACCAACAGTGTTCACTTCAGC

BT059216

Galectin3-binding-R

ACGTGAAAGACATACCTGCCCTCAC

 

STAT1-F

CGGGCCCTGTCACTGTTC

GQ325309

STAT1-R

GGCATACAGGGCTGTCTCT

 

MHCI-F

ACCTGAAGAGAGCGACATGGA

HM181991

MHCI-R

CCCTTCCCACTTCATTTTGGA

 

TRIM16-F

GGACCAAGATCTCCACTACAG

BT046063

TRIM16-R

CTGTGTTTGGGTCCAGTGTG

 

IFIT5-F

GCTGGGAAGAAGCTTAAGCAGAT

BT046021

IFIT5-R

TCAGAGGCCTCGCCAACT

 

PBEF-F

CACCAACAGGAGACTTTGTGACA

BT072670

PBEF-R

AAGCAGATCTGGACCGTATTCC

 

IRF7B-F

GAGGAGTGGGCAGAGAACTA

NM_001171850

IRF7B-R

TTCTGGGAGACTGGCTGGG

 

β-actin-F

CCAGTCCTGCTCACTGAGGC

AF012125

β-actin-R

GGTCTCAAACATGATCTGGGTCA

 

Errfi-F

ACCTACATCCCCACCCTAAC

NM_001173711

Errfi-R

CAGAAACACACTGCCATCC

 

AP1-F

TCTGTCCCAAGAACATCACC

BT045224

AP1-R

TCTGAGAGTCACAACTGCC

 

Decorin-F

ACCTGGCTAAGCTGGGTCTA

NM_001173562

Decorin-R

TGTCCAGGTGAAGCTCTCTG

 

CD209-F

TCTGACCCTGAAGCTGAAC

NM_001124633

CD209-R

ACACTCCCTACACTTCCTTAC

 

C7-1-F

ATACCAATGCCAGCCTTCC

NM_001124618

C7-1-R

ATCCGACCAATCACAATCAC

 

C1qt5-F

AGAAGGGAGAGAAGGGAGAC

NM_001140506

C1qt5-R

GCTGAAGGCTGATTTGGGAG

 

Cacb2-F

AGAGCAGAGAAAGCAGAGAC

NM_001173925

Cacb2-R

TCATACTCCTCCTCTCCAAAC

 

CtlrA -F

AAACGCATTTGTCAGATGGA

NM_001123579

CtlrA-R

GGAAGTTCATGGCTTGGTTT