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Table 2 Summary of read numbers and composition of raw reads based on RNA-seq data

From: De novo assembly and transcriptome analysis of Atlantic salmon macrophage/dendritic-like TO cells following type I IFN treatment and Salmonid alphavirus subtype-3 infection

Parameters rIFN treated TO-cells SAV-3 infected TO-cells TO-cells
A: Summary of reads based on RNA-seq   
Total Reads 23,113,874 (100.00%) 24,608,338 (100.00%) 23,421,631 (100.00%)
Total Mapped Reads 18,025,140 (77.98%) 20,547,388 (83.50%) 17,901,910 (76.43%)
Unique Match 16,482,782 (71.31%) 19,313,673 (78.48%) 16,225,274 (69.27%)
Multi-position Match 1,542,358 (6.67%) 1,233,715 (5.01%) 1,676,636 (7.16%)
Total Unmapped Reads 5,088,734 (22.02%) 4,060,950 (16.50%) 5,519,721 (23.57%)
B: Composition of raw reads   
Reads containing adaptors 50,0443 (2.12%) 670,840 (2.65%) 393,459 (1,65%)
Reading containing N 0,0 (0.05) 0,0 (0,0) 0,0 (0,0%)
Low quality reads 22858 (0.10%) 31,578 (0,12%) 29,011 (0,12%)