Table 4 Repertoire of type I IFN and SAV-3 induced antiviral genes
Family | Gene name | ABBR | Gene ID | Accession no | Fold increase | |
|---|---|---|---|---|---|---|
TO-VS-IFN | TO-VS-SAV3 | |||||
Co-upregulated | ||||||
TRIM | Tripartite motif-containing protein 16 | TRIM16 | CL256.Contig2 | ACI34046 | 14,62 | 5,31 |
Tripartite motif-containing protein 21 (RO52) | TRIM21 | CL8308.Contig1 | NP_001134045 | 19,38 | 8,31 | |
Tripartite motif-containing protein 25 | TRIM25 | CL9926.Contig3 | ACN11344 | 9,30 | 3,73 | |
Tripartite motif-containing protein 39 | TRIM39 | Unigene7574 | XP_003977898 | 288,01 | 105,42 | |
IFIT | IFN-induced protein with tetratricopeptide repeats 1 | IFIT1 | Unigene6661 | AAP42146 | 438,18 | 119,60 |
IFN-induced protein with tetratricopeptide repeats 5 | IFIT5 | Unigene6169 | ACI34283 | 76,11 | 52,63 | |
IFI | IFN alpha-inducible protein 27 | IFI27 | Unigene6684 | XP_004082421 | 9,22 | 5,00 |
IFN-induced protein 44 | IFI44 | Unigene8623 | NP_001133872 | 25,10 | 14,65 | |
IFN-inducible protein Gig2-like | IFIGig2 | CL7586.Contig1 | ACH85338 | 73,07 | 28,29 | |
GTPase | IFN-induced very large GTPase 1-like | VLIG-1 | CL1484.Contig1 | XP_003459832 | 917,18 | 421,46 |
IFN-induced GTP-binding protein Mx | Mx | Unigene6767 | NP_001133390 | 147,00 | 56,84 | |
PKR | dsRNA-activated protein kinase R | PKR | CL5598.Contig1 | ABU24344 | 9,36 | 3,39 |
ISG15 | ISG15-like protein | ISG-15 | CL2919.Contig1 | NM_001123640 | 78,80 | 51,16 |
Viperin | Viperin | Viperin | CL833.Contig1 | NP_001134411 | 155,95 | 91,15 |
Others | Megalocytivirus-induced protein 1 | CsMig1 | CL2853.Contig4 | AFR33114 | 18,38 | 13,20 |
VIG-2 protein | VIG-2 | Unigene6370 | NP_001117757 | 43,91 | 19,60 | |
Macrophage inflammatory protein 2 precursor | MIP-2 | Unigene2684 | ACO13449 | 12,80 | 37,38 | |
Lectin galactoside-binding soluble 3-binding protein | LGALS3BP | Unigene6855 | NP_001135263 | 36,76 | 12,21 | |
Co-downregulated | ||||||
EBPD | Enhancer binding protein delta | EBPD | CL3161.Contig1 | ACF94990 | −2,77 | −5,82 |
C7-1 | Complement protein component C7-1 precursor | C7-1 | Unigene15784 | NP_001118090 | −2,09 | −2,18 |
CXC | CXC chemokine d1 | CXCd1 | Unigene7278 | ABA86669 | −2,70 | −3,33 |
CLEC4E | C-type lectin domain family 4 member E | CLEC4E | CL6250.Contig1 | ACI67923 | −6,32 | −2,22 |