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Table 5 Adaptive immune genes expressed in response to type I IFN treatment and SAV-3 infection in TO-cells

From: De novo assembly and transcriptome analysis of Atlantic salmon macrophage/dendritic-like TO cells following type I IFN treatment and Salmonid alphavirus subtype-3 infection

Family

Gene name

Accession no

Gene ID

Fold increase (TO-VS-IFN)

Fold increase (TO-VS-SAV3)

Co-upregulated

     

 MHC

MHC class I a

AB162342

Unigene9065

5,56

2,95

 

MHC class I b

AB162343

Unigene11510

12,67

6,30

 Chemokines

C-X-C motif chemokine 10 precursor

ACI69209

Unigene8163

26,09

183,97

 

C-C motif chemokine 19 precursor

ACI67502

CL6894.Contig1

56,60

26,18

 

C-X-C chemokine receptor type 3

NP_001133965

Unigene14449

9,19

25,20

 Cytokines

IL-2 receptor

NP_001134020

Unigene16712

943,36

256,15

 

Interleukin-10 receptor beta chain precursor

ACI67546

Unigene6317

25,12

13,71

 Humoral

IgH locus A

GU129139

Unigene6854

6,40

2,54

 

IgH locus B

GU129140

Unigene10943

14,40

6,83

 

pre-B-cell colony-enhancing factor-like

NP_997833

Unigene6530

75,82

36,65

Co-downregulated

     

 Cytokines

Interleukin-12 receptor subunit beta-2-like

XP_003452899

CL7886.Contig1

−2,28

−3,75

 

Perforin-1-like

XP_003446177

Unigene21875

−2,17

−2,23