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Table 2 Gene definitions and quantification results for certain exemplary genes in the liver tissue sample (read length = 75 bp)

From: A comprehensive evaluation of ensembl, RefSeq, and UCSC annotations in the context of RNA-seq read mapping and gene quantification

Model Gene Counts Transcript Strand Chromosome Start End Length
Ensembl PIK3CA 1094 4 + 3 178,865,902 178,957,881 9411
EGFR 6644 11 + 7 55,086,714 55,324,313 12961
SLC30A1 9755 1 - 1 211,744,910 211,752,084 5474
PIGY 0 1 - 4 89,442,724 89,442,940 217
PYURF 1799 1 - 4 89,442,136 89,444,964 1361
LUZP6 0 1 - 7 135,612,022 135,612,198 177
MTPN 2618 2 - 7 135,611,509 135,662,101 3775
PECAM1 0 9 - HG183_PATCH 62,399,863 62,491,136 4671
RefGene PIK3CA 492 1 + 3 178,866,311 178,952,497 3709
EGFR 2248 4 + 7 55,086,725 55,275,031 6571
SLC30A1 1636 1 - 1 211,748,381 211,752,099 2018
PIGY 1175 1 - 4 89,442,129 89,444,952 1356
PYURF 1175 1 - 4 89,442,129 89,444,952 1356
LUZP6 1908 1 - 7 135,611,503 135,662,204 3884
MTPN 1908 1 - 7 135,611,503 135,662,204 3884
PECAM1 1068 1 - 17 62,396,777 62,407,083 4453