Figure 2

Visual depiction of simulated dataset containing DCs and CCs. The parental profiles and the hybrid profiles were drawn using markers as described in the section “Analytical Pipeline”. Each marker was represented using a vertical bar of height 1 unit and the bars for parent 1 were given a dark blue color and those for parent 2 were given a yellow color. The hybrids were drawn based on their genomic composition inherited from each parent. The regions where there were no markers showed up as white regions. Recombinant 1 had one conventional crossover and two DCs placed next to it (<1500 bp). Recombinants 2 and 3 had one conventional recombination each but recombinant 3 had noise introduced into it to replicate experimental artifacts. Recombinants 4 and 5 represented recombinants with multiple recombinations but having different profiles respectively. The break points detected by individual algorithms were indicated next to the break points in color-coded shapes respectively.