Table 1 Strawberry accessions and sequence data used for variant discovery in the respective filtration panels
Name | Taxon | NCBI SRX numbers | Total trimmed reads (Million) | Mean coverage depth ( x ) | GDP | HD-16 | HD-20 |
|---|---|---|---|---|---|---|---|
‘Winter Dawn’ | F. ×ananassa | SRX651592 | 394.5 | 48.7 | √ | √ | √ |
‘Sweet Charlie’ | F. ×ananassa | SRX651582 | 407.8 | 37.0 | √ | √ | √ |
‘Fenella’ | F. ×ananassa | SRX651547 | 397.7 | 34.9 | √ | √ | √ |
HolKor 2321 | F. ×ananassa | SRX651548 | 221.6 | 32.3 | √ | √ | √ |
‘Emily’ | F. ×ananassa | SRX651546 | 400.4 | 31.2 | √ | √ | √ |
HolKor 2637 1 | F. ×ananassa | SRX651574 | 220.1 | 30.0 | √ | √ | √ |
HolKor 2557 | F. ×ananassa | SRX651553 | 208.6 | 26.0 | √ | √ | √ |
HolKor 2549 | F. ×ananassa | SRX651551 | 204.7 | 24.9 | √ | √ | √ |
Dover × Camarosa F 2 _34 2 | F. ×ananassa | SRX651599 | 76.9 | 19.7 | √ | √ | - |
HolKor 2637 3 | F. ×ananassa | SRX651567 | 113.4 | 16.7 | √ | √ | - |
HolKor 2580 | F. ×ananassa | SRX651558 | 192.2 | 15.1 | √ | - | - |
‘Korona’ | F. ×ananassa | SRX651580 | 194.2 | 14.2 | √ | - | - |
HolKor 2529 | F. ×ananassa | SRX651549 | 125.1 | 5.7 | √ | - | - |
‘Holiday’ | F. ×ananassa | SRX651579 | 123.1 | 4.6 | √ | - | - |
CA65.65-601 | F. ×ananassa | SRX651545 | 126.1 | 4.3 | √ | - | - |
NH SB480 4 | F. ×ananassa | - | 107.9 | 2.7 | √ | - | - |
CFRA 1992 (BC6) | F. virginiana | SRX651527 | 101.8 | 2.0 | √ | - | - |
CFRA 1691 | F. chiloensis | SRX651521 | 142.1 | 5.6 | √ | - | - |
CFRA 743 | F. chiloensis | SRX651520 | 397.5 | 4.1 | √ | - | - |
Fc 4 | F. chiloensis | - | 359.7 | 4.0 | √ | - | - |
CFRA 480 (‘Yellow Wonder’) 5 | F. vesca | SRX651526 | 38.3 | 9.5 | - | - | - |
CFRA 1984 (‘Pawtuckaway’) 5 | F. vesca | SRX651525 | 39.3 | 9.1 | - | - | - |
CFRA 985 (‘Baron Solemacher’) 5 | F. vesca | SRX651524 | 30.9 | 6.6 | - | - | - |
CFRA 1947 6 | F. mandshurica | SRX651523 | 31.8 | 7.1 | - | - | - |
CFRA 1849 6 | F. iinumae | SRX651522 | 35.5 | 4.6 | - | - | - |
F1D 4 | F. iinumae | - | 171.0 | 36.0 | - | - | - |