Table 1 Genome-scale identification of NdgR binding regions
Peak position | Summit | p -value a | Fold enrichment | Motif position | Consensus sequence |
|---|---|---|---|---|---|
1662185-1663375 | 1662816 | 197.21 | 4.41 | 1662781-1662795 | GTCCACCCACCGGAC |
1827404-1829415 | 1828601 | 768.68 | 6.04 | 1828423-1828437 | GTCCACCACGCGGAC |
1896843-1898738 | 1897467 | 276.74 | 5.04 | 1897508-1897522 | GTCCATCCTGCGGAC |
2261363-2262539 | 2261945 | 101.39 | 3.54 | 2261989-2262003 | GTCCACCCTTTGGAC |
3161458-3164611 | 3163260 | 370.89 | 4.20 | 3163207-3163221 | GATCACACTCCGGAA |
3268432-3272122 | 3269947 | 139.50 | 4.06 | 3269922-3269936 | GTTCACCTCGTGGTC |
3702919-3706333 | 3704715 | 225.72 | 4.78 | 3704846-3704860 | TTCCACCTTGATCAC |
4578730-4584188 | 4580680 | 129.09 | 5.24 | 4580694-4580708 | TCCCACTCCTTGGAC |
4600435-4603056 | 4601769 | 162.13 | 4.23 | 4601788-4601802 | GGTCAGCTCCTGGAC |
5625694-5627962 | 5626280 | 123.46 | 3.01 | N.A. | N.A. |
5741825-5743033 | 5742489 | 133.14 | 3.08 | 5742420-5742434 | GACCACCTCGTGGAC |
5862424-5864373 | 5863498 | 180.16 | 4.28 | 5863483-5863497 | GTCCACACCGTGGAC |
5880856-5884347 | 5882679 | 160.34 | 3.32 | 5882573-5882587 | GTCCGCCTTGAGGAC |
6001446-6003903 | 6002834 | 279.72 | 3.77 | 6002862-6002876 | TCCCACCCACTTGAC |
6013959-6016845 | 6015210 | 329.68 | 5.54 | 6015204-6015218 | GTCCGCCATGCGGAC |
6048531-6053535 | 6051804 | 218.57 | 4.40 | 6051783-6051797 | GTCCAGAACGCCGAC |
6059038-6060496 | 6059807 | 175.83 | 4.20 | 6059774-6059788 | GTCCAGCAAGTGGAC |
6701783-6704095 | 6702908 | 291.94 | 3.29 | 6702861-6702875 | GTCCACATTTTGGAT |
7199604-7200985 | 7200371 | 425.57 | 5.00 | 7200390-7200404 | TTTTGCCATGTGGAC |