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Table 2 The NdgR regulon genes

From: Genome-scale analysis reveals a role for NdgR in the thiol oxidative stress response in Streptomyces coelicolor

SCO no.

Name

Function

Category a

Note b

SCO1552

 

rRNA methylase

2.2.11 RNA synthesis, modification, DNA transcript'n

 

SCO1553

cysG

Putative uroporphyrin-III methyltransferase

3.2.6 Heme, porphyrin

*

SCO1707

 

Putative ABC sugar transporter, ATP-binding subunit

1.5.0 Transport/binding proteins

*

SCO1776

pyrG

Putative CTP synthetase

3.3.11 Nucleotide interconversions

*, I

SCO2103

metF

5,10-methylenetetrahydrofolate reductase

3.1.14 Methionine

*

SCO2910

cysM

Cysteine synthase

3.1.6 Cysteine

 

SCO2911

 

Hypothetical protein

0.0.2 Conserved in organism other than Escherichia coli

 

SCO2912

 

Hypothetical protein

0.0.0 Unknown function, no known homologs

*

SCO2999

gdhB

Glutamate dehydrogenase

0.0.2 Conserved in organism other than Escherichia coli

*, I

SCO3345

ilvD

Dihydroxy acid dehydratase

3.1.21 Valine

*

SCO4164

cysA

Putative thiosulfate sulfurtransferase

3.3.19 Sulfur metabolism

*

SCO4165

 

Hypothetical protein

0.0.2 Conserved in organism other than Escherichia coli

 

SCO4193

 

Putative ATP/GTP-binding membrane protein

4.1.6 Gram + ve membrane

*, I

SCO5178

moeB

Putative sulfurylase

3.2.14 Thiamine

*

SCO5277

 

Magnesium chelatase

7.0.0 Not classified (included putative assignments)

*, I

SCO5395

 

Putative ABC transporter ATP-binding subunit

1.5.0 Transport/binding proteins

*

SCO5413

 

Possible MarR-transcriptional regulator

6.3.7 MarR

*

SCO5512

ilvB

Acetolactate synthase

3.4.3 Carbon compounds

*

SCO5513

ilvN

Acetolactate synthase 3 regulatory subunit

3.1.21 Valine

 

SCO5514

ilvC

Acetolactate synthase small subunit

3.1.21 Valine

 

SCO5522

leuB

3-isopropylmalate dehydrogenase

3.1.12 Leucine

*

SCO5523

ilvE

Branched-chain amino acid aminotransferase

3.1.21 Valine

 

SCO5552

ndgR

Putative regulator

6.5.0 Others

*, D

SCO5553

leuC

Isopropylmalate isomerase large subunit

3.1.12 Leucine

*, D

SCO5554

leuD

Isopropylmalate isomerase small subunit

3.1.12 Leucine

 

SCO5562

thiL

Thiamin monophosphate kinase

3.2.14 Thiamine

*

SCO5563

thiD

Phosphomethylpyrimidine kinase

3.3.14 Thiamine

 

SCO6097

cysN

Sulfate adenylyltransferase subunit 1

3.3.19 Sulfur metabolism

 

SCO6098

cysD

Sulfate adenylyltransferase subunit 2

3.3.19 Sulfur metabolism

 

SCO6099

cysC

Adenylylsulphate kinase

3.3.19 Sulfur metabolism

 

SCO6100

cysH

Phosphoadenosine phosphosulfate reductase

3.3.19 Sulfur metabolism

 

SCO6101

 

Hypothetical protein

0.0.0 Unknown function, no known homologs

 

SCO6102

cysI

Putative nitrite/sulfite reductase

3.5.2 Anaerobic respiration

*

SCO6510

 

Conserved hypothetical protein

0.0.2 Conserved in organism other than Escherichia coli

*

  1. aCategories are defined by functional classification of S. coelicolor genes in The Sanger Institute database (ftp://ftp.sanger.ac.uk/pub/S_coelicolor/classwise.txt).
  2. bGenes with direct binding by NdgR are marked with asterisks (*). Binding of the intragenic regions is denoted as I. Binding of the upstream region between two divergent genes is denoted as D.
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BMC Genomics

ISSN: 1471-2164

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