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Table 4 Transposable element methylation of PA64S(S) and PA64S (F) based on 10 kb tiled genome windows

From: Genome-wide analysis of DNA methylation in photoperiod- and thermo-sensitive male sterile rice Peiai 64S

Type

PA64S(S)

PA64S(F)

reads

%

reads

%

LTR/Copia

521,175

5.62

533,088

5.79

DNA/En-Spm

658,162

7.1

676,617

7.35

LTR/Gypsy

4,045,323

43.63

4,293,192

46.61

LTR

55,692

0.6

55,798

0.61

LINE/L1

174,518

1.88

171,516

1.86

SINE

167,785

1.81

154,945

1.68

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BMC Genomics

ISSN: 1471-2164

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