|
Parents and F1 plants
|
Read number
|
Total RAD sequence (bp)*
|
Number of RAD tags
|
Total sequence of RAD taqs (bp)**
|
Coverage depth***
|
Sequence coverage****
|
GC rate (%)
|
Total SNP
|
Heterozygous SNP rate (%)
|
|---|
|
Females
| | | | | | | | | |
|
Siirt
|
15,873,498
|
1,301,626,836
|
422,422
|
34,638,604
|
37.6
|
2.0
|
37.65
|
90,999
|
17.3
|
|
P-F-1
|
24,754,856
|
2,029,898,192
|
442,751
|
36,305,582
|
55.9
|
3.1
|
37.12
|
98,348
|
26.9
|
|
P-F-2
|
22,527,994
|
1,847,295,508
|
513,815
|
42,132,830
|
43.8
|
2.8
|
37.60
|
97,562
|
28.0
|
|
P-F-3
|
28,035,806
|
2,298,936,092
|
513,654
|
42,119,628
|
54.6
|
3.5
|
37.07
|
99,776
|
25.3
|
|
P-F-4
|
33,578,112
|
2,753,405,184
|
560,479
|
45,959,278
|
59.9
|
4.2
|
36.86
|
101,339
|
30.5
|
|
P-F-5
|
23,563,272
|
1,932,188,304
|
539,390
|
44,229,980
|
43.7
|
2.9
|
37.47
|
98,767
|
31.9
|
|
P-F-6
|
23,374,790
|
1,916,732,780
|
523,591
|
42,934,462
|
44.6
|
2.9
|
37.38
|
98,876
|
29.9
|
|
P-F-7
|
28,326,906
|
2,322,806,292
|
539,702
|
44,255,564
|
52.5
|
3.5
|
36.88
|
100,355
|
27.4
|
|
P-F-8
|
25,474,290
|
2,088,891,780
|
431,895
|
35,415,390
|
59.0
|
3.2
|
37.64
|
96,551
|
17.5
|
|
Subtotal
|
225,509,524
|
18,491,780,968
|
4,487,699
|
367,991,318
|
451.6
|
28.0
|
-
|
882,573
|
-
|
|
Subaverage
|
25,056,614
|
2,054,642,330
|
498,633
|
40,887,924
|
50.2
|
3.1
|
37.30
|
98,064
|
26.1
|
|
Males
| | | | | | | | | |
|
Bağyolu
|
27,187,532
|
2,229,377,624
|
552,533
|
45,307,706
|
49.2
|
3.4
|
38.00
|
79,746
|
33.1
|
|
P-M-1
|
22,615,328
|
1,854,456,896
|
498,044
|
40,839,608
|
45.4
|
2.8
|
36.98
|
98,046
|
27.2
|
|
P-M-2
|
10,108,252
|
828,876,664
|
422,176
|
34,618,432
|
23.9
|
1.3
|
37.10
|
75,521
|
20.5
|
|
P-M-3
|
19,417,040
|
1,592,197,280
|
541,272
|
44,384,304
|
35.9
|
2.4
|
37.48
|
95,941
|
26.7
|
|
P-M-4
|
11,079,312
|
908,503,584
|
410,036
|
33,622,952
|
27.0
|
1.4
|
38.77
|
72,909
|
18.6
|
|
P-M-5
|
38,882,284
|
3,188,347,288
|
657,285
|
53,897,370
|
59.2
|
4.8
|
37.65
|
102,340
|
30.5
|
|
P-M-6
|
26,158,302
|
2,144,980,764
|
569,710
|
46,716,220
|
45.9
|
3.2
|
37.58
|
100,049
|
27.0
|
|
P-M-7
|
29,947,304
|
2,455,678,928
|
596,268
|
48,893,976
|
50.2
|
3.7
|
37.51
|
99,531
|
27.5
|
|
P-M-8
|
39,817,004
|
3,264,994,328
|
623,841
|
51,154,962
|
63.8
|
4.9
|
37.41
|
103,115
|
27.8
|
|
Subtotal
|
225,212,358
|
18,467,413,356
|
4,871,165
|
399,435,530
|
400.6
|
28.0
|
-
|
827,198
|
-
|
|
Subaverage
|
25,023,595
|
2,051,934,817
|
541,241
|
44,381,726
|
44.5
|
3.1
|
37.61
|
91,911
|
26.5
|
|
Total
|
450,721,882
|
36,959,194,324
|
9,358,864
|
767,426,848
|
852.2
|
56.0
| |
1,709,771
| |
|
Average
|
25,040,105
|
2,053,288,574
|
519,937
|
42,634,825
|
47.3
|
3.1
|
37.45
|
94,987
|
26.3
|
- *Total RAD sequence was calculated by multiplying read number by 82 bp read length of Illumina.
- **Total sequence of RAD taqs was calculated by multiplying number of RAD tags by Illumina 82 bp read length.
- ***Coverage depth was calculated by dividing Illumina read number by number of RAD taqs.
- ****Sequence coverage was calculated by dividing total RAD sequence (bp) by the estimated genome size (660 Mbp) of pistachio.
