Table 1 Mapping results of RNA sequencing reads of the rice introgression line H471 carrying Xa39 and parents Huang-Hua-Zhan (HHZ) and PSBRC28 (P28) at 1 and 2Â days post-inoculation (dpi) with Xanthomonas oryzae pv. oryzae and under non-inoculation conditions (CK)
Samples | Biological replication I | Biological replication II | Total mapped unique genes | ||
|---|---|---|---|---|---|
Total filtered pair- end reads | Total mapped reads (%) | Total filtered pair- end reads | Total mapped reads (%) | ||
H471-CK | 2 × 10,068,639 | 16,551,528 (82.2) | 2 × 10,083,264 | 16,585,631 (82.3) | 23625 |
HHZ-CK | 2 × 8,894,670 | 14,403,823 (81.4) | 2 × 9,326,860 | 15,241,546 (81.8) | 23129 |
P28-CK | 2 × 10,384,097 | 16,978,445 (81.9) | 2 × 10,326,754 | 16,811,305 (81.4) | 23693 |
H471-1dpi | 2 × 5,232,832 | 8,601,699 (82.2) | 2 × 11,822,492 | 19,355,542 (81.9) | 22637 |
HHZ-1dpi | 2 × 10,296,887 | 17,007,657 (82.6) | 2 × 6,174,204 | 10,024,331 (81.2) | 22725 |
P28-1dpi | 2 × 12,505,956 | 20,248,936 (81.2) | 2 × 11,484,590 | 18,600,880 (81.2) | 23171 |
H471-2dpi | 2 × 10,902,112 | 17,726,360 (81.3) | 2 × 11,010,814 | 17,955,446 (81.6) | 22954 |
HHZ-2dpi | 2 × 5,873,150 | 9,522,108 (81.1) | 2 × 5,453,981 | 8,865,653 (81.3) | 21785 |
P28-2dpi | 2 × 7,462,058 | 12,131,598 (81.3) | 2 × 10,400,231 | 16,928,155 (81.4) | 22556 |