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Table 1 Mapping results of RNA sequencing reads of the rice introgression line H471 carrying Xa39 and parents Huang-Hua-Zhan (HHZ) and PSBRC28 (P28) at 1 and 2 days post-inoculation (dpi) with Xanthomonas oryzae pv. oryzae and under non-inoculation conditions (CK)

From: Comparative transcriptome profiling of a rice line carrying Xa39 and its parents triggered by Xanthomonas oryzae pv. oryzae provides novel insights into the broad-spectrum hypersensitive response

Samples Biological replication I Biological replication II Total mapped unique genes
Total filtered pair- end reads Total mapped reads (%) Total filtered pair- end reads Total mapped reads (%)
H471-CK 2 × 10,068,639 16,551,528 (82.2) 2 × 10,083,264 16,585,631 (82.3) 23625
HHZ-CK 2 × 8,894,670 14,403,823 (81.4) 2 × 9,326,860 15,241,546 (81.8) 23129
P28-CK 2 × 10,384,097 16,978,445 (81.9) 2 × 10,326,754 16,811,305 (81.4) 23693
H471-1dpi 2 × 5,232,832 8,601,699 (82.2) 2 × 11,822,492 19,355,542 (81.9) 22637
HHZ-1dpi 2 × 10,296,887 17,007,657 (82.6) 2 × 6,174,204 10,024,331 (81.2) 22725
P28-1dpi 2 × 12,505,956 20,248,936 (81.2) 2 × 11,484,590 18,600,880 (81.2) 23171
H471-2dpi 2 × 10,902,112 17,726,360 (81.3) 2 × 11,010,814 17,955,446 (81.6) 22954
HHZ-2dpi 2 × 5,873,150 9,522,108 (81.1) 2 × 5,453,981 8,865,653 (81.3) 21785
P28-2dpi 2 × 7,462,058 12,131,598 (81.3) 2 × 10,400,231 16,928,155 (81.4) 22556