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Table 3 Differential expression of transcription process components in the rice introgression line H471 compared with the recurrent parent Huang-Hua-Zhan (HHZ) after inoculation with Xanthomonas oryzae pv. oryzae

From: Comparative transcriptome profiling of a rice line carrying Xa39 and its parents triggered by Xanthomonas oryzae pv. oryzae provides novel insights into the broad-spectrum hypersensitive response

Gene ID

H471- 1dpi vs HHZ- 1dpi

H471- 2dpi vs HHZ- 2dpi

H471- 1dpi vs H471- CK

H471- 2dpi vs H471- CK

TF family/Annotation

log2 (FC)

Up/Down

log2 (FC)

Up/Down

log2 (FC)

Up/Down

log2 (FC)

Up/Down

Transcription factors

        

LOC_Os03g42280

3.6

up

3.3

up

1.1

up

0.7

--

B3

LOC_Os01g72370

0.6

--

1.5

up

−0.5

--

1.5

up

bHLH/OsIRO2

LOC_Os04g31804

2.4

up

1.8

up

1.5

up

1.4

up

M-type/OsMADS64

LOC_Os07g40570

1.2

up

0.7

--

−0.4

--

−0.7

--

WRKY/OsWRKY96

LOC_Os07g39800

1.5

up

0.9

--

−0.2

--

0.0

--

HRT-like/transcription repressor HOTR

LOC_Os09g06464

−1.0

down

−0.2

--

3.6

up

4.2

up

CO-like/OsCO3/CCT/B-box zinc finger protein

LOC_Os07g47140

−1.4

--

−1.8

down

−1.1

--

−1.7

--

CO-like/CCT/B-box zinc finger protein

LOC_Os03g55164

−1.0

down

−0.7

--

−1.2

down

−1.4

down

WRKY/OsWRKY4

Post-transcriptional processes

        

LOC_Os03g53170

3.2

up

2.6

up

0.9

--

0.4

--

pentatricopeptide

LOC_Os08g12850

−1.1

down

−0.1

--

−0.9

--

−0.4

--

pentatricopeptide

LOC_Os02g43080

1.0

up

0.9

up

0.4

--

0.0

--

PPR repeat domain containing protein