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Table 3 Differential expression of transcription process components in the rice introgression line H471 compared with the recurrent parent Huang-Hua-Zhan (HHZ) after inoculation with Xanthomonas oryzae pv. oryzae

From: Comparative transcriptome profiling of a rice line carrying Xa39 and its parents triggered by Xanthomonas oryzae pv. oryzae provides novel insights into the broad-spectrum hypersensitive response

Gene ID H471- 1dpi vs HHZ- 1dpi H471- 2dpi vs HHZ- 2dpi H471- 1dpi vs H471- CK H471- 2dpi vs H471- CK TF family/Annotation
log2 (FC) Up/Down log2 (FC) Up/Down log2 (FC) Up/Down log2 (FC) Up/Down
Transcription factors         
LOC_Os03g42280 3.6 up 3.3 up 1.1 up 0.7 -- B3
LOC_Os01g72370 0.6 -- 1.5 up −0.5 -- 1.5 up bHLH/OsIRO2
LOC_Os04g31804 2.4 up 1.8 up 1.5 up 1.4 up M-type/OsMADS64
LOC_Os07g40570 1.2 up 0.7 -- −0.4 -- −0.7 -- WRKY/OsWRKY96
LOC_Os07g39800 1.5 up 0.9 -- −0.2 -- 0.0 -- HRT-like/transcription repressor HOTR
LOC_Os09g06464 −1.0 down −0.2 -- 3.6 up 4.2 up CO-like/OsCO3/CCT/B-box zinc finger protein
LOC_Os07g47140 −1.4 -- −1.8 down −1.1 -- −1.7 -- CO-like/CCT/B-box zinc finger protein
LOC_Os03g55164 −1.0 down −0.7 -- −1.2 down −1.4 down WRKY/OsWRKY4
Post-transcriptional processes         
LOC_Os03g53170 3.2 up 2.6 up 0.9 -- 0.4 -- pentatricopeptide
LOC_Os08g12850 −1.1 down −0.1 -- −0.9 -- −0.4 -- pentatricopeptide
LOC_Os02g43080 1.0 up 0.9 up 0.4 -- 0.0 -- PPR repeat domain containing protein