Table 1 Summary of overlaps between selective sweeps in European breeds and previous genomics studies on the signatures of selection
From: A genome-wide scan for signatures of directional selection in domesticated pigs
Association | Breed | Candidate genes |
|---|---|---|
White coat color phenotype [ 4 ] | Yorkshire | DNAJB5, RBBP4, PPRC1 |
Landrace | ENSSSCG00000024845, ISOC1, KIAA1257, METTL13, TMTC1, | |
Selective sweep in domestic pigs [ 36 ] | Yorkshire | ABLIM1, BTBD11, C14orf174, C8orf38, CD68, CILP, CXADR, DNAJB5 |
Landrace | INSR, METTL13, PCDHAC2, RIMS1, RPL35, SYNE1 | |
Domesticated pigs vs. wild boars [ 4 ] | Yorkshire | BAI3, CCDC150, MPDU1, PGAP1, PKP4, ZNF638, ZNF804A |
Landrace | CNTFR, KBTBD12, LIMS3, PCDHAC2, PPFIA4, PRSS54, SF3B1 | |
Asian introgression [ 4 ] | Yorkshire | AQP3, NOLC1, SYNE1, ZNF638 |
Landrace | PPFIA4, STT3B |