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Table 6 Genes selected from wild soybean variety IT182932 a , based on the QTL confidence interval on chromosome 6, with their annotations

From: Genetic variants in root architecture-related genes in a Glycine soja accession, a potential resource to improve cultivated soybean

Gene ID

Annotation

Glyma06g44810

Tetraspanin family protein

Glyma06g44980

Epoxide hydrolase 2-like

Glyma06g44010

8-hydroxyquercetin 8-o-methyltransferase-like isoform 1

Glyma06g44660

Transcription factor bhlh36-like

Glyma06g44990

Epoxide hydrolase 2-like

Glyma06g44600

O-acyltransferase wsd1

Glyma06g44650

Alpha-farnesene synthase

Glyma06g44830

Accelerated cell death 6

Glyma06g44890

Protein

Glyma06g44800

Ribosomal-protein-alanine acetyltransferase-like

Glyma06g44620

ATP synthase mitochondrial f1 complex assembly factor 1-like

Glyma06g44770

MYB Transcription factor

Glyma06g44780

Hypothetical protein PRUPE_ppa014299mg

Glyma06g44970

Gdsl esterase lipase exl3-like

Glyma06g44930

Expansin-b3-like precursor

Glyma06g44730

Probable serine threonine-protein kinase at1g54610-like

Glyma06g44740

PREDICTED: uncharacterized protein LOC100805467

Glyma06g44630

Mitochondrial dihydroorotase

Glyma06g44880

Ankyrin repeat-containing protein at3g12360-like

Glyma06g44790

Caax amino terminal protease family protein

Glyma06g44720

L-type lectin-domain containing receptor kinase -like

Glyma06g44750

Mannan endo-beta-mannosidase 2-like

Glyma06g44640

O-acyltransferase wsd1-like

Glyma06g44900

Ankyrin repeat-containing protein at3g12360-like

Glyma06g45100

Probable protein phosphatase 2c 52-like

Glyma06g45280

Wound-induced protein

Glyma06g45210

Micronuclear linker histone

Glyma06g45590

G-type lectin s-receptor-like serine threonine-protein kinase

Glyma06g45560

Myb-related protein myb4-like

Glyma06g45910

Peroxidase 3

Glyma06g45820

Riboflavin synthase alpha chain

Glyma06g45860

Xyloglucan endotransglucosylase hydrolase protein 9

Glyma06g45740

Probable histone-lysine n-methyltransferase atxr3-like

Glyma06g45300

Unnamed protein product

Glyma06g45420

Wound-induced protein

Glyma06g45230

Tpa: duf566 domain containing family protein

Glyma06g45720

Formin-like protein 5-like

Glyma06g45430

Wound-induced protein

Glyma06g45290

Uncharacterized loc101222779

Glyma06g45920

Peroxidase 3

Glyma06g45800

Proline-rich protein

Glyma06g45550

Myb-related protein myb4-like

Glyma06g45130

Protein

Glyma06g45390

Wound-induced protein

Glyma06g45350

Wound-responsive protein

Glyma06g45650

F-box family protein

Glyma06g45090

Low quality protein: uncharacterized loc101222318

Glyma06g45770

Btb poz domain-containing protein at3g22104-like

Glyma06g45410

Wound-induced protein

Glyma06g45980

Uncharacterized protein LOC100786184 (Predicted)

Glyma06g45020

Uncharacterized protein LOC100305963

Glyma06g45310

Embryo defective 1923 protein

Glyma06g45000

Probable polyol transporter 4-like

Glyma06g45260

Uncharacterized loc101222779

Glyma06g45150

Protein strubbelig-receptor family 3-like

Glyma06g45670

Hypothetical protein MTR_052s0005

Glyma06g45450

Diacylglycerol kinase 5

Glyma06g45830

Uncharacterized loc101209217

Glyma06g45850

E3 ubiquitin-protein ligase rma1h1-like

Glyma06g45370

Wound-induced protein

Glyma06g45520

Myb-related protein myb4-like

Glyma06g45840

Gpi-anchored protein

Glyma06g45380

Wound-induced protein

Glyma06g45960

Plant cell wall protein 88

Glyma06g45680

Dehydration responsive element binding protein

Glyma06g45620

Zinc finger protein constans-like protein

Glyma06g45640

Indole-3-acetic acid-amido synthetase -like

Glyma06g45810

Casp-like protein rcom_1174750-like

Glyma06g45730

Uncharacterized loc101212188

Glyma06g45220

Uncharacterized protein LOC100527304

Glyma06g45400

Uncharacterized loc101222779

Glyma06g45050

Caffeic acid 3-o-methyltransferase

Glyma06g45010

Drought responsive element binding protein 5

Glyma06g45120

Probable indole-3-acetic acid-amido synthetase -like

Glyma06g45160

Secretory carrier-associated membrane protein 1-like

Glyma06g45700

Beta-amylase

Glyma06g45440

Protein thylakoid chloroplastic-like

Glyma06g45110

Cell wall

Glyma06g45990

Ring-box protein 1a-like

Glyma06g45490

Equilibrative nucleoside transporter

Glyma06g45890

Trab domain-containing

Glyma06g45140

Unknown function

Glyma06g45880

Transferring glycosyl

Glyma06g45930

Translation initiation factor

Glyma06g45170

H aca ribonucleoprotein complex non-core subunit naf1

Glyma06g45940

Triptychon and

Glyma06g45510

D6-type cyclin

Glyma06g45950

Isocitrate lyase

Glyma06g45480

Uncharacterized gpi-anchored protein at4g28100-like

Glyma06g45780

Isoprene synthase

Glyma06g45360

Vesicle-associated protein 4-2-like

Glyma06g45200

Xylosyltransferase 1-like

Glyma06g45570

Myb-related protein myb4-like

Glyma06g45240

Wound-induced protein

Glyma06g45460

Myb-related transcription factor

Glyma06g45710

Pentatricopeptide repeat-containing protein at1g08070-like

Glyma06g45080

Elmo domain-containing protein a-like

Glyma06g45610

Outer arm dynein light chain 1 protein

Glyma06g45540

Myb-related protein myb4-like

Glyma06g45580

Uncharacterized protein LOC100781575 (Predicted)

Glyma06g45340

Nad h dehydrogenase mitochondrial-like

Glyma06g45180

Protein ultrapetala 1-like

Glyma06g46540

Replication factor c subunit 1-like

Glyma06g46500

Uncharacterized protein LOC100796231 (Predicted)

Glyma06g46020

Duf246 domain-containing protein

Glyma06g46550

Adipocyte plasma membrane-associated

Glyma06g46530

Fasciclin-like arabinogalactan protein 17-like

Glyma06g46350

L-ascorbate oxidase homolog

Glyma06g46370

B-cell receptor-associated 31-like protein

Glyma06g46880

Pentatricopeptide repeat-containing protein at1g11290-like

Glyma06g46360

Unknown function

Glyma06g46450

Cellulose synthase-like protein h1

Glyma06g46960

Uncharacterized protein LOC100814328 (Predicted)

Glyma06g46520

Probable carboxylesterase 15-like

Glyma06g46660

Rj2 protein

Glyma06g46490

Outer envelope protein chloroplastic-like

Glyma06g46650

Protein

Glyma06g46600

Choline ethanolamine kinase

Glyma06g46150

Protein transparent testa 12-like

Glyma06g46590

Myb transcription factor myb142

Glyma06g46110

Upf0481 protein at3g47200-like

Glyma06g46340

Mip sip subfamily

Glyma06g46320

Zinc finger ccch domain-containing protein 13-like

Glyma06g46290

Protein

Glyma06g46740

Auxin-induced protein 5 ng4-like

Glyma06g46710

Sister chromatid cohesion protein dcc1-like

Glyma06g46640

Transcription initiation factor tfiid subunit 7-like

Glyma06g46750

Cytochrome p450

Glyma06g46190

Aconitate cytoplasmic-like

Glyma06g46610

Ring-h2 finger protein atl69-like

Glyma06g46270

Autophagy-related protein 8c-like

Glyma06g46120

Septum-promoting gtp-binding protein 1-like

Glyma06g46400

S-type anion channel slah1-like

Glyma06g46160

Uncharacterized gpi-anchored protein at1g61900-like

Glyma06g46210

Nedd8-activating enzyme e1 regulatory subunit-like

Glyma06g46260

Upf0481 protein at3g47200-like

Glyma06g46620

Ribosomal l5e family protein

Glyma06g46680

Probable carboxylesterase 6-like

Glyma06g46220

Rrp6-like protein 3

Glyma06g46380

Disease resistance response protein 206-like

Glyma06g46580

Uncharacterized protein LOC100527051

Glyma06g46180

Succinate dehydrogenase subunit 3

Glyma06g46430

Protein usf-like

Glyma06g46630

Protein

Glyma06g46390

Disease resistance response protein 206-like

Glyma06g46760

Cytochrome p450

Glyma06g46300

Zinc metalloprotease slr1821-like

Glyma06g46240

Upf0481 protein at3g47200-like

Glyma06g46410

Mitogen-activated protein kinase kinase kinase a-like

Glyma06g46470

At1g05070 t7a14_6

Glyma06g46090

Upf0481 protein at3g47200-like

Glyma06g46250

Septum-promoting gtp-binding protein 1-like

Glyma06g46170

Uncharacterized protein LOC100779566 (Predicted)

Glyma06g46480

Low quality protein: condensin complex subunit 2-like

Glyma06g46130

Glutamate receptor -like

Glyma06g46570

Proline-rich family protein

Glyma06g46730

Ring-h2 finger protein atl51-like

Glyma06g46420

WRKY transcription factor

Glyma06g46000

Homeobox-leucine zipper protein hdg2-like

Glyma06g46230

Probable beta- -galactosyltransferase 2-like

Glyma06g46560

Yabby2-like transcription factor yab2

Glyma06g46690

Signal peptidase complex catalytic subunit sec11c-like

  1. aThe genes specific to G. soja with a deleterious mutation were obtained from Kim et al. [6,8].