Table 9 List of genes associated with root traits and with the non-synonymous SNPs in V71-370 and PI 407162 parental lines

1

Glyma07g09860 ⁺ Triglyceride lipase-cholesterol esterase

8318354

A

A

C

Phenylalanine to Cysteine

2

Glyma07g32480 ⁺ Apoptosis Inhibitor 5-related

37386211

G

T

G

Proline to Threonine

37386231

C

T

C

Glycine to Glutamic Acid

37388170

C

C

G

Glutamic Acid to Glutamine

3

Glyma15g42220 ⁺ Uncharacterized

49621619

C

C

T

Glutamic Acid to Lysine

49621846

C

C

T

Arginine to Glutamine

4

Glyma06g45920 Peroxidase 3

48646118

C

C

A

Arginine to Leucine

5

Glyma06g44900 Ankyrin repeat-containing protein

47715303

A

G

A

Glutamic Acid to Glycine

6

Glyma06g46170 Uncharacterized

48839708

G

G

C

Glycine to Alanine

48839816

G

G

A

Serine to Asparagine

48839842

G

G

A

Glutamic Acid to Lysine

48840059

G

G

A

Tryptophan (stop gained in wild soybean)

7

Glyma06g45910 Peroxidase 3

48635068

A

A

C

Serine to Alanine

8

Glyma06g46210 NEDD8-activating complex

48869473

A

A

C

Lysine to Asparagine

48873032

C

C

G

Arginine to Cysteine

48873041

C

C

A

Alanine to Glycine

48874136

A

A

G

Threonine to Asparagine

9

Glyma06g45261 Uncharacterized

48049483

A

G

A

Histidine to Arginine