Table 1 Features comparison of current genome browsers
Track type | Tablet [ 9 ] | IGB [ 10 ] | IGV [ 4 ] | savant [ 11 ] | genomeView [ 12 ] | Ucsc genome browser [ 13 ] | ZENBU [ 3 ] | RNASeqBrowser |
|---|---|---|---|---|---|---|---|---|
bed | X | X | X | |||||
wiggle | X | X | ||||||
bam wiggle | X | X | X | X | X | X | X | |
bam overlay wiggle | X | X | ||||||
raw reads | X | X | X | X | X | X | ||
raw read specific reads | X | X | X | |||||
paried end arrange | X | X | X | |||||
SNP calling | X | X | X | X | ||||
InDel | X | X | X | |||||
peak calling | X | |||||||
installation | S | S | S | S | S | W | W | S |