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Table 1 In silico analysis of 167 MADS-box genes identified in B. rapa with their closest Arabidopsis homologs and sequence characteristics (aa, amino acids; Kda, Kilo dalton)

From: Genome-wide identification and characterization of MADS-box family genes related to organ development and stress resistance in Brassica rapa

Sl no. Gene name Gene locus Chr. no. Closest arabidopsis homolog Protein No. of introns Group
Length (aa) Mol.wt. (Kda)
1 BrMADS1 Bra040348 A08 AGL18 293 32.69 5 MIKCc
2 BrMADS2 Bra014628 A04 AGL18 250 28.02 7 MIKCc
3 BrMADS3 Bra007324 A09 AGL18 255 28.59 7 MIKCc
4 BrMADS4 Bra019018 A06 AGL18 200 22.90 6 MIKCc
5 BrMADS5 Bra008802 A10 AGL15 264 30.13 7 MIKCc
6 BrMADS6 Bra006214 A03 AGL15 264 30.00 7 MIKCc
7 BrMADS7 Bra031888 A02 AGL69 178 19.84 5 MIKCc
8 BrMADS8 Bra024350 A06 AGL27/FLM 196 22.43 6 MIKCc
9 BrMADS9 Bra031886 A02 AGL69 250 28.14 6 MIKCc
10 BrMADS10 Bra024351 A06 AGL27/FLM 200 22.75 6 MIKCc
11 BrMADS11 Bra031884 A02 AGL27/FLM 199 22.80 6 MIKCc
12 BrMADS12 Bra028599 A02 AGL25/FLC 196 21.93 6 MIKCc
13 BrMADS13 Bra009055 A10 AGL25/FLC 206 22.94 6 MIKCc
14 BrMADS14 Bra006051 A03 AGL25/FLC 197 21.64 6 MIKCc
15 BrMADS15 Bra022771 A03 AGL25/FLC 143 16.04 4 MIKCc
16 BrMADS16 Bra039921 A09 AGL17 227 26.38 6 MIKCc
17 BrMADS17 Bra030222 A04 AGL17 227 26.18 6 MIKCc
18 BrMADS18 Bra011797 A01 AGL21 228 33.78 6 MIKCc
19 BrMADS19 Bra010623 A08 AGL21 214 24.65 5 MIKCc
20 BrMADS20 Bra017638 A03 AGL16 240 27.51 6 MIKCc
21 BrMADS21 Bra011509 A01 AGL16 290 40.19 6 MIKCc
22 BrMADS22 Bra038511 A09 AGL22/SVP 241 27.31 8 MIKCc
23 BrMADS23 Bra030228 A04 AGL22/SVP 236 26.78 7 MIKCc
24 BrMADS24 Bra019221 A03 AGL24 216 24.55 6 MIKCc
25 BrMADS25 Bra013812 A01 AGL24 792 88.94 15 MIKCc
26 BrMADS26 Bra029365 A02 AGL32/TT16 242 28.44 5 MIKCc
27 BrMADS27 Bra026507 A01 AGL32/TT16 300 36.72 7 MIKCc
28 BrMADS28 Bra013028 A03 AGL32/TT16 240 28.11 6 MIKCc
29 BrMADS29 Bra020093 A02 PISTILLATA 203 23.38 5 MIKCc
30 BrMADS30 Bra006549 A03 PISTILLATA 208 24.05 4 MIKCc
31 BrMADS31 Bra002285 A10 PISTILLATA 146 16.62 3 MIKCc
32 BrMADS32 Bra014822 A04 APETALA3 224 26.39 6 MIKCc
33 BrMADS33 Bra007067 A09 APETALA3 232 27.28 6 MIKCc
34 BrMADS34 Bra007972 A02 AGL12 211 23.99 6 MIKCc
35 BrMADS35 Bra003919 A07 AGL12 212 24.00 6 MIKCc
36 BrMADS36 Bra039324 A04 AGL20/SOC1 213 24.35 6 MIKCc
37 BrMADS37 Bra000393 A03 AGL20/SOC1 213 24.35 6 MIKCc
38 BrMADS38 Bra004928 A05 AGL20/SOC1 213 24.40 6 MIKCc
39 BrMADS39 Bra029424 A09 AGL14 173 19.78 4 MIKCc
40 BrMADS40 Bra020826 A08 AGL19 146 16.16 2 MIKCc
41 BrMADS41 Bra013662 A01 AGL19 718 81.80 10 MIKCc
42 BrMADS42 Bra019343 A03 AGL19 219 25.07 6 MIKCc
43 BrMADS43 Bra035907 A09 AGL42 272 31.73 9 MIKCc
44 BrMADS44 Bra029281 A02 AGL42 209 24.74 6 MIKCc
45 BrMADS45 Bra029314 A02 AGL72 187 21.99 3 MIKCc
46 BrMADS46 Bra013891 A01 AGL72 189 21.94 3 MIKCc
47 BrMADS47 Bra010465 A08 AGL72 187 21.31 2 MIKCc
48 BrMADS48 Bra012957 A03 AGL72 211 24.14 5 MIKCc
49 BrMADS49 Bra029155 A03 AGL72 209 23.90 6 MIKCc
50 BrMADS50 Bra028282 A01 AGL72 202 23.37 6 MIKCc
51 BrMADS51 Bra029154 A03 AGL71 219 25.46 6 MIKCc
52 BrMADS52 Bra028283 A01 AGL71 199 23.05 5 MIKCc
53 BrMADS53 Bra037895 A09 AGL11 230 26.27 6 MIKCc
54 BrMADS54 Bra000696 A03 AGL11 231 26.38 6 MIKCc
55 BrMADS55 Bra013364 A01 AGAMOUS 252 28.78 6 MIKCc
56 BrMADS56 Bra012564 A03 AGAMOUS 251 28.77 6 MIKCc
57 BrMADS57 Bra014552 A04 AGL1/SHP1 248 28.39 6 MIKCc
58 BrMADS58 Bra003356 A07 AGL1/SHP1 273 31.26 6 MIKCc
59 BrMADS59 Bra007419 A09 AGL1/SHP1 245 27.76 6 MIKCc
60 BrMADS60 Bra004716 A05 AGL5/SHP2 244 28.01 5 MIKCc
61 BrMADS61 Bra038326 A02 AGL7/AP1 256 30.12 7 MIKCc
62 BrMADS62 Bra004361 A07 AGL7/AP1 189 22.51 5 MIKCc
63 BrMADS63 Bra004007 A07 AGL7/AP1 271 31.67 8 MIKCc
64 BrMADS64 Bra035952 A09 AGL8/FUL 241 27.50 7 MIKCc
65 BrMADS65 Bra029347 A02 AGL8/FUL 240 27.34 7 MIKCc
66 BrMADS66 Bra012997 A03 AGL8/FUL 241 27.45 7 MIKCc
67 BrMADS67 Bra036201 A09 AGL79 248 27.97 7 MIKCc
68 BrMADS68 Bra025411 A06 AGL79 176 20.25 5 MIKCc
69 BrMADS69 Bra020742 A02 AGL79 577 64.08 9 MIKCc
70 BrMADS70 Bra011021 A08 AGL10/CAL 254 29.88 6 MIKCc
71 BrMADS71 Bra014454 A04 AGL13 230 26.21 6 MIKCc
72 BrMADS72 Bra004927 A05 AGL6 242 27.60 7 MIKCc
73 BrMADS73 Bra000392 A03 AGL6 257 29.47 7 MIKCc
74 BrMADS74 Bra021470 A01 AGL4/SEP2 252 28.77 6 MIKCc
75 BrMADS75 Bra039170 A05 AGL4SEP2 250 28.57 6 MIKCc
76 BrMADS76 Bra010955 A08 AGL9/SEP3 244 28.21 7 MIKCc
77 BrMADS77 Bra032814 A09 AGL9/SEP3 253 29.32 7 MIKCc
78 BrMADS78 Bra026543 A02 AGL3/SEP4 269 30.63 7 MIKCc
79 BrMADS79 Bra017376 A09 AGL3/SEP4 243 27.76 7 MIKCc
80 BrMADS80 Bra025126 A06 AGL3/SEP4 257 29.41 7 MIKCc
81 BrMADS81 Bra030032 A07 AGL9/SEP3 252 29.25 7 MIKCc
82 BrMADS82 Bra008674 A10 AGL2/SEP1 252 28.78 6 MIKCc
83 BrMADS83 Bra006322 A03 AGL2/SEP1 250 28.55 6 MIKCc
84 BrMADS84 Bra003278 A07 AGL18 61 6.91 0 MIKCc
85 BrMADS85 Bra003279 A07 AGL18 197 22.06 6 MIKCc
86 BrMADS86 Bra005545 A05 AGL18 59 6.90 0 MIKCc
87 BrMADS87 Bra029494 A09 AGL15 118 13.66 3 MIKCc
88 BrMADS88 Bra016128 A07 AGL12 62 7.04 0 MIKCc
89 BrMADS89 Bra019163 A03 AGL72 172 19.64 4 MIKCc
90 BrMADS90 Bra011763 A01 AGL67 175 20.52 5 MIKC*
91 BrMADS91 Bra015645 A07 AGL67 209 24.60 7 MIKC*
92 BrMADS92 Bra012308 A07 AGL104 335 38.15 9 MIKC*
93 BrMADS93 Bra016386 A08 AGL104 311 35.23 7 MIKC*
94 BrMADS94 Bra015643 A07 AGL66 329 37.59 8 MIKC*
95 BrMADS95 Bra025685 A06 AGL65 379 43.18 9 MIKC*
96 BrMADS96 Bra016544 A08 AGL65 306 35.12 5 MIKC*
97 BrMADS97 Bra031049 A09 AGL65 382 43.92 9 MIKC*
98 BrMADS98 Bra024792 A06 AGL30 377 42.65 10 MIKC*
99 BrMADS99 Bra017404 A09 AGL30 379 42.78 8 MIKC*
100 BrMADS100 Bra004393 A07 AGL94 349 40.09 7 MIKC*
101 BrMADS101 Bra040149 A01 AGL57 174 19.90 0
102 BrMADS102 Bra037759 A09 AGL58 190 21.24 0
103 BrMADS103 Bra031945 A02 AGL57 193 22.17 0
104 BrMADS104 Bra032347 A09 AGL64 186 20.77 0
105 BrMADS105 Bra038225 A01 AGL28 261 30.31 1
106 BrMADS106 Bra022434 A05 AGL62 283 32.41 1
107 BrMADS107 Bra020242 A02 AGL62 248 28.09 1
108 BrMADS108 Bra002480 A10 AGL62 279 32.06 1
109 BrMADS109 Bra035685 A04 AGL40 293 32.84 3
110 BrMADS110 Bra011938 A07 AGL23 238 27.09 1
111 BrMADS111 Bra032057 A04 AGL61 180 20.50 0
112 BrMADS112 Bra007829 A09 AGL61 207 23.13 0
113 BrMADS113 Bra026764 A09 AGL62 168 19.24 0
114 BrMADS114 Bra001209 A03 AGL91 179 20.33 0
115 BrMADS115 Bra021910 A04 AGL29 182 20.76 0
116 BrMADS116 Bra003884 A07 AGL60 212 24.16 0
117 BrMADS117 Bra026674 A09 AGL100 206 23.59 0
118 BrMADS118 Bra033492 A01 AGL84 293 32.77 0
119 BrMADS119 Bra032767 A04 AGL84 309 34.32 2
120 BrMADS120 Bra010027 A06 AGL73 345 38.29 0
121 BrMADS121 Bra037434 A06 AGL73 261 29.19 0
122 BrMADS122 Bra018727 A06 AGL74 245 27.51 0
123 BrMADS123 Bra014217 A08 AGL84 277 30.41 0
124 BrMADS124 Bra027116 A09 AGL55 243 27.09 0
125 BrMADS125 Bra040965 Scaffold000343 AGL55 198 21.96 --
126 BrMADS126 Bra009436 A10 AGL97 306 33.85 0
127 BrMADS127 Bra038728 A01 AGL74 173 19.84 0
128 BrMADS128 Bra020600 A02 AGL39 263 24.32 0
129 BrMADS129 Bra020247 A02 AGL23 269 30.64 1
130 BrMADS130 Bra028965 A03 AGL47 274 31.46 0
131 BrMADS131 Bra002611 A10 AGL82 297 34.61 0
132 BrMADS132 Bra037571 A01 AGL103 342 39.17 0
133 BrMADS133 Bra022341 A05 AGL103 368 42.12 0
134 BrMADS134 Bra031864 A02 AGL52 331 37.76 0
135 BrMADS135 Bra025619 A04 AGL76 367 42.32 0
136 BrMADS136 Bra025607 A04 AGL76 349 40.12 0
137 BrMADS137 Bra025609 A04 AGL76 336 38.32 0
138 BrMADS138 Bra018767 A06 AGL93 306 34.70 0
139 BrMADS139 Bra015129 A07 AGL93 319 35.90 0
140 BrMADS140 Bra020923 A08 AGL89 209 24.26 0
141 BrMADS141 Bra018741 A06 AGL89 264 30.10 0
142 BrMADS142 Bra028020 A09 AGL89 263 29.76 1
143 BrMADS143 Bra007138 A09 AGL89 281 32.09 0
144 BrMADS144 Bra028019 A09 AGL89 285 32.59 0
145 BrMADS145 Bra004071 A07 AGL101 284 32.33 0
146 BrMADS146 Bra040248 A01 AGL46 413 46.76 1
147 BrMADS147 Bra005166 A05 AGL46 125 14.56 0
148 BrMADS148 Bra035448 A01 AGL46 264 30.77 1
149 BrMADS149 Bra035449 A01 AGL46 264 30.80 1
150 BrMADS150 Bra039404 A05 AGL45 302 34.96 0
151 BrMADS151 Bra020555 A02 AGL35 216 24.32 0
152 BrMADS152 Bra009913 A06 AGL35 203 22.78 0
153 BrMADS153 Bra018490 A05 AGL80 290 33.43 0
154 BrMADS154 Bra029469 A09 AGL80 304 34.48 0
155 BrMADS155 Bra041022 Scaffold000385 AGL80 334 36.92 --
156 BrMADS156 Bra020552 A02 AGL37 341 38.45 0
157 BrMADS157 Bra020550 A02 AGL36 380 42.85 0
158 BrMADS158 Bra020525 A02 AGL92 395 44.76 0
159 BrMADS159 Bra020524 A02 AGL92 360 40.86 0
160 BrMADS160 Bra009911 A06 AGL92 364 41.44 0
161 BrMADS161 Bra012335 A07 AGL87 162 18.99 0
162 BrMADS162 Bra024521 A09 AGL87 162 18.87 0
163 BrMADS163 Bra028730 A02 AGL96 252 28.88 0
164 BrMADS164 Bra009199 A10 AGL96 202 23.13 0
165 BrMADS165 Bra009176 A10 AGL96 192 21.99 0
166 BrMADS166 Bra009174 A10 AGL96 191 22.01 0
167 BrMADS167 Bra034809 A05 AGL95 353 40.27 0