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Table 3 Regions of the genome that have different ROH45 frequencies across bull 1 and cow 2 populations

From: Characterizing homozygosity across United States, New Zealand and Australian Jersey cow and bull populations

  

ROH45 Difference (Maximum Location 4 )

Chr 3

Largest Interval 4

US vs AU Cows

US vs AU Bulls

US vs NZ Bulls

AU vs NZ Bulls

1

6.5 -27.1

-

-

0.17 (14.4)

0.10 (18.6)

1

48.9-55.4

-

-

0.30 (51.3)

-

1

61.2-77.9

-

-

0.31 (67.3)

0.18 (67.3)

2

80.2-94.1

-

-

0.17 (89.1)

-

2

119.2-129.4

-

0.28 (123.9)

0.42 (125.2

0.15 (128.4)

3

1.7-10.5

-

-

0.21 (6.6)

0.16 (6.6)

3

39.1-46.0

-

-

0.29 (43.9)

0.19 (43.9)

3

46.7-62.0

-

-

0.22 (57.1)

0.14 (57.1)

4

8.0-12.2

-

-

0.24 (11.7)

-

4

41.2-46.4

0.13 (45.0)

-

0.16 (41.7)

0.23 (41.7)

4

80.7-86.7

-

-

0.14 (84.5)

-

4

92.1-96.4

0.14 (96.3)

-

0.20 (94.8)

-

4

102.2-106.2

-

-

0.15 (103.4)

0.13 (101.6)

6

47.2-51.8

0.16 (47.8)

-

-

-

6

55.6-61.1

-

-

0.14 (57.0)

 

6

102.2-106.2

-

-

0.20 (103.2)

0.15 (105.6)

7

19.9-34.6

-

-

0.35 (27.1)

0.19 (28.0)

7

49.0-58.4

-

-

0.22 (56.1)

-

8

20.4-24.8

-

-

0.13 (21.6)

 

8

37.9-51.7

-

-

0.21 (41.6)

0.12 (50.7)

8

52.1-57.4

-

-

0.15 (53.2)

-

9

57.0-74.3

-

-

0.14 (60.1)

0.17 (62.3)

9

86.8-92.3

-

-

0.12 (88.7)

-

11

18.7-24.4

-

-

0.15 (21.9)

-

12

22.9-29.4

-

-

0.19 (27.3)

-

12

85.8-91.1

-

-

0.16 (86.7)

-

13

59.3-67.3

-

-

0.24 (61.7)

-

14

72.4-79.8

-

-

0.15 (75.6)

0.12 (75.0)

16

51.9-60.0

-

-

0.16 (56.3)

-

17

.1-4.2

0.16 (2.2)

-

-

-

17

12.6-25.2

-

-

0.24 (20.4)

 

18

22.4-26.6

-

-

0.16 (22.5)

 

18

40.2-49.8

-

-

0.22 (46.6)

0.13 (46.9)

20

22.6-29.9

0.25 (25.4)

-

-

-

20

42.2-58.7

-

-

0.23 (55.2)

-

21

0.8-9.0

-

-

0.12 (8.3)

-

21

25.2-33.6

-

-

0.14 (30.0)

-

24

26.3-30.8

-

-

0.16 (30.1)

-

26

9.8.2-23.6

0.15 (20.3)

-

0.28 (17.4)

0.15 (16.9)

26

27.9-32.9

-

-

0.17 (30.2)

-

  1. 1Number of bulls totaled 1810: 736 from United States (US); 306 from Australia (AU); 768 from New Zealand (NZ).
  2. 2Number of cows totaled 1933: 1047 from US; 886 from AU.
  3. 3Chr refers to chromosome.
  4. 4The largest interval and maximum location are in Megabases based on build UMD 3.1 (http://bovinegenome.org/cgi-bin/gbrowse/bovine_UMD31/).