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Table 4 D. rerio proteins with ≥ 4 contigs aligning to ≥ 80% of the D. rerio sequence

From: The central nervous system transcriptome of the weakly electric brown ghost knifefish (Apteronotus leptorhynchus): de novo assembly, annotation, and proteomics validation

D. rerio reference protein (UniProt ID)

Protein name

# Contigs in assembly

# of D.rerio genes

CALM_DANRE

Calmodulin (CaM)

7

6

E7F3G4_DANRE

Uncharacterized protein

6

1

H33_DANRE

Histone H3.3

5

4

E7FDA5_DANRE

Uncharacterized protein

5

1

A2BHK0_DANRE

Uncharacterized protein

4

1

F1R8F5_DANRE

Uncharacterized protein (fragment)

4

1

F8W544_DANRE

Phosphatidylinositol transfer protein, alpha b

4

1

Q6P2T9_DANRE

Cd63 antigen

4

1

Q6PBX6_DANRE

Ubiquitin-conjugating enzyme E2D 2 (UBC4/5 homolog, yeast)

4

1

  1. Multiple sequence alignment of assembly sequences to phosphatidylinositol transfer protein (F8W544_DANRE) is shown in Figure 6B. Similarly, a multiple sequence alignment of assembly sequences compared to uncharacterized D. rerio protein (A2BHK0) is shown in Additional file 8: Figure S3.
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BMC Genomics

ISSN: 1471-2164

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