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Table 1 Statistics of H3K4me3 ChIP-seq peaks against gene expression

From: Analysis of RNA decay factor mediated RNA stability contributions on RNA abundance

  Total No peak Low Peak High Peak
Number of Genes 18,853 7,737 2,732 8,384
Genes having RNA level of >1 RPKM 10,421 957 1,808 7,656
Genes having RNA level of >10 RPKM 4,848 175 600 4,073
  1. Peaks were called using MACS and “peak present” represents genes with H3K4me3 and pol II peaks within 1.5 kb of the TSS (details in Methods). “No peak” represents genes without any H3K4me3 or pol II peaks within 1.5 kb of the TSS.
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BMC Genomics

ISSN: 1471-2164

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