|
Total
|
ChIP(−) RNA(−)
|
ChIP(−) RNA(+)
|
ChIP(+) RNA(−)
|
ChIP(+) RNA(+) (Total)
|
ChIP(+) RNA(+) (×2)
|
ChIP(+) RNA(+) (×1.1)
|
---|
Number of genes with a RNA half-life
|
12,479
|
6,235
|
603
|
2,745
|
2,896
|
1,617
|
187
|
Median half-life
|
nd
|
nd
|
13.2
|
6.0
|
11.6
|
11.0
|
10.9
|
- In Table 2, we only considered genes with compatible half-life measurements from BRIC-seq. ChIP(+): H3K4me3 intensities larger than 1 × 104 and a presence of polII peak , ChIP(−): H3K4me3 intensities smaller than 1 × 104 and an absence of polII peak. RNA(+): RPKM value larger than 10, RNA(−): RPKM value smaller than 10. For ChIP(+)/RNA(+) region; total: all genes, ×2: genes within two-fold of the regression line, ×1.1: genes within the 1.1-fold of the regression line. nd: not determined.