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Table 3 List of GO enrichments for transcripts in different ChIP-seq and RNA-seq fractions

From: Analysis of RNA decay factor mediated RNA stability contributions on RNA abundance

A) ChIP (+)/RNA (+) GO enrichment
GO:ID GO: term Number of genes False-discovery rate
GO: 0044822 poly (A) RNA binding 618 6.00e-261
GO: 0006412 translation 293 3.86e-196
GO: 0010467 gene expression 387 5.61e-162
B) ChIP (−)/RNA (+) GO enrichment
GO: ID GO: term Number of genes False-discovery rate
GO: 0005737 cytoplasm 138 2.26e-2
GO: 0070062 extracellular vesicular exosome 74 2.61e-2
GO: 0005635 nuclear envelope 15 2.81e-2
C) ChIP (+)/RNA (−) GO enrichment
GO: ID GO: term Number of genes False-discovery rate
GO: 0003677 DNA binding 378 2.96e-28
GO: 0006355 regulation of transcription, DNA-templated 266 4.44e-17
GO: 0006351 transcription, DNA-templated 361 8.60e-17
D) ChIP (+)/RNA (−)/half-life < 4 h GO enrichment
GO: ID GO: term Number of genes False-discovery rate
GO: 0003677 DNA binding 216 5.19e-58
GO: 0006351 transcription, DNA-templated 192 1.37e-37
GO: 0006355 regulation of transcription, DNA-templated 147 5.13e-34