Table 3 List of GO enrichments for transcripts in different ChIP-seq and RNA-seq fractions
From: Analysis of RNA decay factor mediated RNA stability contributions on RNA abundance
A) ChIP (+)/RNA (+) GO enrichment | |||
GO:ID | GO: term | Number of genes | False-discovery rate |
GO: 0044822 | poly (A) RNA binding | 618 | 6.00e-261 |
GO: 0006412 | translation | 293 | 3.86e-196 |
GO: 0010467 | gene expression | 387 | 5.61e-162 |
B) ChIP (−)/RNA (+) GO enrichment | |||
GO: ID | GO: term | Number of genes | False-discovery rate |
GO: 0005737 | cytoplasm | 138 | 2.26e-2 |
GO: 0070062 | extracellular vesicular exosome | 74 | 2.61e-2 |
GO: 0005635 | nuclear envelope | 15 | 2.81e-2 |
C) ChIP (+)/RNA (−) GO enrichment | |||
GO: ID | GO: term | Number of genes | False-discovery rate |
GO: 0003677 | DNA binding | 378 | 2.96e-28 |
GO: 0006355 | regulation of transcription, DNA-templated | 266 | 4.44e-17 |
GO: 0006351 | transcription, DNA-templated | 361 | 8.60e-17 |
D) ChIP (+)/RNA (−)/half-life < 4 h GO enrichment | |||
GO: ID | GO: term | Number of genes | False-discovery rate |
GO: 0003677 | DNA binding | 216 | 5.19e-58 |
GO: 0006351 | transcription, DNA-templated | 192 | 1.37e-37 |
GO: 0006355 | regulation of transcription, DNA-templated | 147 | 5.13e-34 |