Table 1 Summary of reads in Cry1Ab susceptible strain (ACB-BtS) and resistant strain (ACB-AbR) of Ostrinia furnacalis transcriptomes
From: Transcriptome differences between Cry1Ab resistant and susceptible strains of Asian corn borer
| Â | ACB-BtS-1 | ACB-BtS-2 | ACB-AbR-1 | ACB-AbR-2 | |
|---|---|---|---|---|---|
Total clean nucleotides (nt) | 4,631,663,700 | 4,662,124,200 | 4,765,847,040 | 4,920,077,340 | |
Total clean reads | 51,462,903 | 51,801,380 | 52,953,856 | 54,667,526 | |
GC percentage (%) | 49.50 | 50.04 | 48.80 | 49.22 | |
Total number of contigs | 102,236 | 91,311 | 88,634 | 84,209 | |
Mean length of contigs (nt) | 348 | 332 | 366 | 607 | |
Total number of unigene | 63,032 | 53,710 | 57,770 | 54,468 | |
Mean length of unigene (nt) | 607 | 580 | 629 | 613 | |
Distinct clusters | 14,628 | 11,426 | 12,912 | 11,397 | |
Distinct singletons | 48,350 | 42,284 | 44,858 | 43,071 | |
SNP type | A - G | 36,334 | 34,649 | 25,361 | 23,984 |
C - T | 36,868 | 35,104 | 25,385 | 24,441 | |
A - C | 9,884 | 8,980 | 7,092 | 6,778 | |
A - T | 13,589 | 12,324 | 9,887 | 9,283 | |
C - G | 8,141 | 7,147 | 5,797 | 5,515 | |
G - T | 9,676 | 8,866 | 6,855 | 6,464 | |