Table 1 Potential for production of bioactive secondary metabolites from 21 marine bacterial strains
From: Genome mining reveals unlocked bioactive potential of marine Gram-negative bacteria
Strain | Species | Genome size (Mb) | Antibacterial activity | AntiSMASH (total hits) | BAGEL3 | NapDos | NP.search | ||||
|---|---|---|---|---|---|---|---|---|---|---|---|
KS-domains | C-domains | NRPS | PKS | Mix | Trans PKS | ||||||
S2753 | Photobacterium halotolerans | 5.5 | yes | 12 | 0 | 3 | 19 | 1 | 0 | 1 | 0 |
S2052 | Vibrio coralliilyticus | 5.4 | yes | 7 | 2 | 7 | 13 | 2 | 0 | 2 | 0 |
S2043 | Vibrio coralliilyticus. | 5.4 | yes | 7 | 2 | 7 | 13 | 2 | 0 | 2 | 0 |
S2604 | Vibrio nigripulchritudo | 6.2 | yes | 9 | 0 | 6 | 17 | 1 | 0 | 0 | 0 |
S2394 | Vibrio neptunius | 5.2 | yes | 6 | 1 | 4 | 12 | 1 | 0 | 1 | 0 |
S2757 | Vibrio sp. | 4.0 | no | 2 | 0 | 5 | 0 | 0 | 0 | 0 | 0 |
S2040 | Pseudoalteromonas piscicida | 5.3 | yes | 14 | 1 | 8 | 58 | 7 | 0 | 1 | 0 |
S2724 | Pseudoalteromonas piscicida | 5.2 | yes | 10 | 1 | 7 | 30 | 2 | 0 | 2 | 0 |
S816 | Pseudoalteromonas agarivorans | 4.4 | no | 2 | 0 | 5 | 0 | 0 | 0 | 0 | 0 |
S3258 | Pseudoalteromonas ruthenica | 4.1 | yes | 3 | 0 | 5 | 0 | 0 | 0 | 0 | 0 |
S3137 | Pseudoalteromonas ruthenica | 4.1 | yes | 3 | 0 | 5 | 0 | 0 | 0 | 0 | 0 |
S4054 | Pseudoaltermonas luteoviolacea | 6.1 | yes | 20 | 1 | 14 | 48 | 3 | 0 | 4 | 1 |
S2471 | Pseudoalteromonas rubra | 5.8 | yes | 17 | 2 | 12 | 56 | 3 | 0 | 2 | 1 |
S2151 | Halomonas sp. | 5.2 | no | 5 | 0 | 7 | 0 | 0 | 0 | 0 | 0 |
S3726 | Marinomonas sp. | 5.4 | yes | 5 | 0 | 6 | 17 | 2 | 0 | 0 | 0 |
S2292 | Spongiobacter sp. | 4.7 | yes | 5 | 1 | 3 | 3 | 0 | 0 | 0 | 0 |
S4079 | Loktanella sp. | 3.6 | no | 5 | 1 | 3 | 3 | 0 | 0 | 0 | 0 |
S4493 | Paracoccus sp. | 4.0 | yes | 11 | 1 | 3 | 2 | 0 | 0 | 0 | 0 |
S1942 | Ruegeria mobilis | 4.8 | yes | 8 | 1 | 4 | 1 | 0 | 0 | 0 | 0 |
F1926 | Ruegeria mobilis | 4.6 | yes | 9 | 0 | 5 | 1 | 0 | 0 | 0 | 0 |
DSM17395 | Phaeobacter inhibens | 3.8 | yes | 9 + 1 | 0 | 4 | 1 | 1 | 0 | 0 | 0 |