Transcriptomic profiling of the salt-stress response in the halophyte Halogeton glomeratus

BMC Genomics

Table 1 Statistical summary of sequencing and assembly results

	0 h	6 h	12 h	24 h	72 h
Total Raw Reads	60,099,376	59,434,584	59,981,694	58,988,346	59,451,888
Total Clean Reads	53,035,664	51,344,528	53,343,062	52,930,276	54,646,950
Total Clean Nucleotides (nt)	4,773,209,760	4,621,007,520	4,800,875,580	4,763,724,840	4,918,225,500
Q20 Percentage	97.68%	97.77%	97.70%	97.74%	97.66%
N Percentage	0.00%	0.00%	0.00%	0.00%	0.00%
GC Percentage	43.90%	44.20%	43.79%	43.74%	44.08%
Total Contigs	75,823	76,045	69,207	73,309	67,563
Total Length (nt)	32,435,990	30,098,496	29,746,317	31,507,438	30,173,681
Mean Length (nt)	428	396	430	430	447
N50	913	785	967	918	991
Total Unigenes	58,699	60,883	51,573	57,557	53,264
Total Length (nt)	33,330,719	29,510,487	29,170,625	31,846,285	29,670,894
Mean Length (nt)	568	485	566	553	557
N50	850	672	826	820	800
All Unigenes	Total Number: 50,267; Total Length (nt): 43,714,924; Mean Length (nt): 870; N50: 1441

Note: The Q20 percentage is the proportion of nucleotides with a quality value > 20. The N percentage is the proportion of unknown nucleotides in clean reads. The GC percentage is the proportion of guanidine and cytosine nucleotides among total nucleotides. N50 is 50% of the assembled bases that were incorporated into sequences with a length of N50 or longer.

ISSN: 1471-2164